Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   G6R31_RS02045 Genome accession   NZ_CP049357
Coordinates   401028..403268 (+) Length   746 a.a.
NCBI ID   WP_308422281.1    Uniprot ID   -
Organism   Deinococcus wulumuqiensis R12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396028..408268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6R31_RS02015 (G6R31_02015) - 396221..397003 (+) 783 WP_017869604.1 DUF4388 domain-containing protein -
  G6R31_RS02020 (G6R31_02020) - 397262..398014 (-) 753 WP_017869603.1 TSUP family transporter -
  G6R31_RS02025 (G6R31_02025) - 398078..398497 (+) 420 WP_017869602.1 organic hydroperoxide resistance protein -
  G6R31_RS02030 (G6R31_02030) gatA 398569..400017 (-) 1449 WP_025568004.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  G6R31_RS02035 (G6R31_02035) - 400066..400617 (+) 552 WP_152423500.1 hypothetical protein -
  G6R31_RS02040 (G6R31_02040) comEA 400651..401031 (+) 381 WP_017869599.1 ComEA family DNA-binding protein Machinery gene
  G6R31_RS02045 (G6R31_02045) comEC 401028..403268 (+) 2241 WP_308422281.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G6R31_RS02050 (G6R31_02050) - 403334..404335 (+) 1002 WP_017869597.1 SIS domain-containing protein -
  G6R31_RS02055 (G6R31_02055) - 404766..405521 (+) 756 WP_017869596.1 serine/threonine-protein kinase -
  G6R31_RS02060 (G6R31_02060) - 405947..406174 (-) 228 WP_017870243.1 hypothetical protein -
  G6R31_RS02065 (G6R31_02065) msrA 406174..406767 (-) 594 WP_017870242.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 77752.84 Da        Isoelectric Point: 10.2977

>NTDB_id=426264 G6R31_RS02045 WP_308422281.1 401028..403268(+) (comEC) [Deinococcus wulumuqiensis R12]
MTGHDPQTGEVRPPPPGSRAQGGRLAWSVPLALGMVGGILLHLGLSWGALALLAGTLLSVLDARPLLASLVLLGAVLGFG
SAHLQAREPDRMAPWVGALVTLRGHWDGQFLTLDDPAARVALAPKPKQGPGELVVSGRLIRPEGRRTPGGFDQAAWLRSQ
GGLLVPTPKTVLVRAEVKRHVPEQGLRGWFRRGLSAGLPSRPAALMTAVELGERGDIGRESFDEGFSVRDAFARAGLAHL
MALSGQNVALLTGTLIWLLGALGARPVWKYGLPAALLPVYLLLLVGATPSITRAVLMGGAALLALMVGRGRLDPLGVVAL
AAVACLLLFPLWLLDIGFQLSFLAVLGLLLSGRLAERLPARWPRALRLALSATVLAELATLPVIAHTFGELPLVGLPANL
LAAPLMAALVPLGFVAGLLGPAGGLVNWAVAPLASALLWVAQTFGSAPVLTWGNLGAGGFVAYALAAAAGAGWLLGRVRG
QAALTAALACAALTWLPGQLRPPRELVFLDVGQGDATLLRVPGLTMLIDGGGSVGSDYDVGRGTVLPALRALGVRKLDVV
VATHADTDHVEGLSSVLRGLPVGELWVGHLKKPGEDPVLDAVLSAAHERKVPVRELRRGDRVTAGPVSVTALWPAGHVWS
TEDNDNSVALRVEDGEFRAALLGDLPDPAEALVGAGDLTLLKAAHHGSRFSTGEALLRQTTPSDVLISVGRNTYGHPTRA
VLDRIAAAGAKVWRTDELGTVRWPLP

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=426264 G6R31_RS02045 WP_308422281.1 401028..403268(+) (comEC) [Deinococcus wulumuqiensis R12]
GTGACGGGTCACGACCCGCAGACGGGCGAGGTGCGGCCTCCTCCGCCCGGCTCCCGTGCCCAGGGCGGGCGGCTGGCGTG
GTCGGTGCCGCTGGCGCTCGGCATGGTCGGCGGGATTTTGCTGCACCTGGGGCTGTCCTGGGGCGCTCTGGCGCTGCTGG
CCGGAACGCTGCTGAGCGTGCTCGACGCCCGTCCGCTGTTGGCCTCGCTGGTGCTGCTCGGCGCGGTGCTCGGCTTCGGC
TCGGCGCACTTGCAGGCCCGCGAACCGGACCGCATGGCCCCCTGGGTCGGCGCCCTCGTGACGCTGCGCGGGCACTGGGA
CGGGCAGTTTCTGACGCTGGACGACCCGGCGGCGCGGGTGGCCCTCGCGCCCAAGCCCAAACAGGGACCGGGCGAACTGG
TGGTTTCTGGTCGCCTGATTCGCCCGGAAGGACGGCGCACGCCCGGCGGTTTCGACCAAGCGGCGTGGCTGCGCTCGCAG
GGCGGGCTGCTGGTGCCCACCCCGAAAACGGTGCTGGTGCGGGCCGAGGTCAAGCGGCACGTTCCGGAACAGGGGCTGCG
CGGCTGGTTTCGCCGGGGCCTGAGCGCGGGGCTGCCTTCCCGACCCGCCGCGCTGATGACGGCGGTGGAACTGGGAGAAC
GCGGCGACATCGGGCGCGAGAGCTTCGACGAGGGCTTTTCGGTGCGCGACGCTTTCGCCCGCGCAGGGCTGGCGCACCTG
ATGGCGCTGAGCGGGCAGAACGTGGCGCTGCTGACCGGCACGCTCATCTGGCTGCTCGGCGCTCTGGGGGCGCGGCCCGT
ATGGAAGTACGGCCTGCCCGCCGCGCTGCTTCCGGTGTATCTGCTGCTCCTGGTCGGTGCGACCCCCAGCATCACCCGCG
CGGTGCTGATGGGCGGGGCGGCGCTTCTGGCGCTGATGGTGGGGCGGGGCCGACTCGACCCGCTGGGGGTGGTCGCGCTG
GCGGCGGTCGCCTGCCTGCTGCTGTTTCCGCTGTGGCTGCTGGACATCGGGTTCCAGCTTTCCTTTCTGGCGGTGCTGGG
CCTGCTGCTCTCGGGCCGGCTGGCCGAGCGGCTCCCGGCGCGCTGGCCGCGTGCGCTGCGGCTGGCGCTCTCGGCCACCG
TCCTGGCCGAACTCGCCACGCTGCCCGTCATCGCCCACACCTTCGGGGAACTGCCGCTGGTGGGGTTGCCGGCCAACCTG
CTCGCCGCGCCCCTCATGGCCGCGCTGGTGCCGCTGGGGTTTGTCGCGGGGCTGCTGGGTCCGGCGGGGGGGCTGGTGAA
CTGGGCGGTGGCCCCCCTCGCGTCCGCGCTGCTGTGGGTCGCGCAGACCTTCGGCAGTGCCCCGGTGCTGACCTGGGGCA
ACCTCGGCGCGGGCGGCTTTGTCGCCTATGCACTGGCGGCAGCGGCGGGGGCAGGCTGGCTGCTGGGCCGGGTGCGCGGA
CAGGCGGCGCTGACGGCAGCCCTCGCCTGCGCCGCGCTGACCTGGCTGCCCGGACAGCTTCGCCCGCCCCGCGAACTGGT
GTTTCTGGACGTGGGCCAGGGCGACGCGACCCTGCTGCGGGTGCCGGGTCTGACGATGCTCATCGACGGCGGCGGCTCGG
TCGGCAGCGACTACGACGTGGGCCGGGGCACCGTGCTGCCTGCTCTGCGGGCGCTGGGCGTGCGAAAACTGGACGTGGTG
GTGGCGACGCACGCCGACACCGACCATGTCGAGGGCCTGTCCAGCGTGCTGCGGGGCCTTCCGGTGGGCGAACTGTGGGT
GGGCCACCTCAAGAAGCCGGGTGAAGACCCGGTGCTGGACGCCGTTCTCTCGGCTGCCCACGAACGGAAGGTCCCAGTGC
GCGAGCTTCGCCGGGGCGACCGGGTGACGGCTGGCCCGGTCAGCGTGACGGCCCTCTGGCCCGCCGGACACGTCTGGTCC
ACCGAGGACAACGACAACTCGGTGGCGCTGCGGGTGGAAGACGGCGAGTTCCGGGCCGCGCTGCTCGGCGACCTGCCCGA
CCCCGCCGAGGCCCTGGTCGGCGCGGGCGACCTCACGCTGCTCAAGGCCGCGCACCACGGCAGCCGCTTCAGCACCGGCG
AGGCGCTGCTGCGGCAGACGACCCCCAGCGACGTTCTTATCAGTGTGGGGCGCAACACCTACGGCCACCCCACGCGGGCC
GTGCTGGACCGCATCGCCGCTGCCGGGGCGAAGGTCTGGCGAACCGACGAACTGGGCACGGTGCGCTGGCCTTTGCCCTG
A

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(551-682)

Competence protein (Competence)

(228-473)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

85.561

100

0.858