Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   G6R31_RS02040 Genome accession   NZ_CP049357
Coordinates   400651..401031 (+) Length   126 a.a.
NCBI ID   WP_017869599.1    Uniprot ID   -
Organism   Deinococcus wulumuqiensis R12     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395651..406031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6R31_RS02015 (G6R31_02015) - 396221..397003 (+) 783 WP_017869604.1 DUF4388 domain-containing protein -
  G6R31_RS02020 (G6R31_02020) - 397262..398014 (-) 753 WP_017869603.1 TSUP family transporter -
  G6R31_RS02025 (G6R31_02025) - 398078..398497 (+) 420 WP_017869602.1 organic hydroperoxide resistance protein -
  G6R31_RS02030 (G6R31_02030) gatA 398569..400017 (-) 1449 WP_025568004.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  G6R31_RS02035 (G6R31_02035) - 400066..400617 (+) 552 WP_152423500.1 hypothetical protein -
  G6R31_RS02040 (G6R31_02040) comEA 400651..401031 (+) 381 WP_017869599.1 ComEA family DNA-binding protein Machinery gene
  G6R31_RS02045 (G6R31_02045) comEC 401028..403268 (+) 2241 WP_308422281.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G6R31_RS02050 (G6R31_02050) - 403334..404335 (+) 1002 WP_017869597.1 SIS domain-containing protein -
  G6R31_RS02055 (G6R31_02055) - 404766..405521 (+) 756 WP_017869596.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13252.45 Da        Isoelectric Point: 10.2967

>NTDB_id=426263 G6R31_RS02040 WP_017869599.1 400651..401031(+) (comEA) [Deinococcus wulumuqiensis R12]
MPPQERVWQALLAAGTLLVGALTLGPALLPRPQVPSVTRTALPPVQAGTPGEPPTYPATPSVTPLISGRVDLNTASAEQL
EALPRVGPALARKIIAGRPYRSLDDLDRVKGVGEATLRDLAPLVKW

Nucleotide


Download         Length: 381 bp        

>NTDB_id=426263 G6R31_RS02040 WP_017869599.1 400651..401031(+) (comEA) [Deinococcus wulumuqiensis R12]
ATGCCCCCTCAAGAACGGGTCTGGCAAGCTCTTCTGGCTGCTGGCACGCTGCTGGTCGGCGCCCTGACCCTCGGCCCCGC
GCTGCTGCCGCGCCCGCAGGTGCCTTCGGTGACCCGCACGGCGCTGCCCCCGGTCCAGGCCGGAACGCCGGGCGAGCCGC
CGACCTATCCGGCCACCCCGAGTGTGACTCCCCTCATCAGTGGGCGGGTGGACCTGAACACGGCGAGTGCAGAACAACTG
GAAGCCCTGCCCCGCGTCGGCCCGGCCCTGGCAAGGAAGATCATTGCCGGGCGCCCCTACCGCTCCCTCGACGACCTCGA
CCGCGTGAAGGGCGTGGGTGAAGCCACCCTGCGCGACCTCGCCCCGCTGGTGAAGTGGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

80.159

100

0.802