Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G6R31_RS02000 Genome accession   NZ_CP049357
Coordinates   393394..394614 (-) Length   406 a.a.
NCBI ID   WP_025567367.1    Uniprot ID   A0AAV4K119
Organism   Deinococcus wulumuqiensis R12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388394..399614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6R31_RS01970 (G6R31_01970) - 388417..389421 (+) 1005 WP_017869613.1 4Fe-4S binding protein -
  G6R31_RS01975 (G6R31_01975) - 389645..390991 (-) 1347 WP_017869612.1 penicillin-binding protein 2 -
  G6R31_RS01980 (G6R31_01980) - 390982..391347 (-) 366 WP_017869611.1 hypothetical protein -
  G6R31_RS01985 (G6R31_01985) rsmH 391348..392280 (-) 933 WP_051056467.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  G6R31_RS01990 (G6R31_01990) mraZ 392286..392714 (-) 429 WP_017869609.1 division/cell wall cluster transcriptional repressor MraZ -
  G6R31_RS01995 (G6R31_01995) - 392990..393343 (+) 354 WP_017869608.1 DUF423 domain-containing protein -
  G6R31_RS02000 (G6R31_02000) pilC 393394..394614 (-) 1221 WP_025567367.1 type II secretion system F family protein Machinery gene
  G6R31_RS02005 (G6R31_02005) - 394642..395349 (+) 708 WP_229659264.1 L-threonylcarbamoyladenylate synthase -
  G6R31_RS02010 (G6R31_02010) scpB 395346..395906 (+) 561 WP_017869605.1 SMC-Scp complex subunit ScpB -
  G6R31_RS02015 (G6R31_02015) - 396221..397003 (+) 783 WP_017869604.1 DUF4388 domain-containing protein -
  G6R31_RS02020 (G6R31_02020) - 397262..398014 (-) 753 WP_017869603.1 TSUP family transporter -
  G6R31_RS02025 (G6R31_02025) - 398078..398497 (+) 420 WP_017869602.1 organic hydroperoxide resistance protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44394.98 Da        Isoelectric Point: 8.2341

>NTDB_id=426262 G6R31_RS02000 WP_025567367.1 393394..394614(-) (pilC) [Deinococcus wulumuqiensis R12]
MPAYEYRARDRGGRVLKSQMEAESEAQVRDALRARNLMILDIKAPKTGLNADIKIPGLTDRPPGLKQVAVFSKQLATLIN
AGVPLVQSLAILQRQLDNKTFENVIKKVRGEVESGVPLSEALQEHPKIFGRLFINLVRAGETSGTLDTVLDRIADFQEKQ
LALQGKIKGALTYPTVVLVFAIGITYFLLTTIVPQFASILTQLNAPLPFITRMLMAVSSFLQNSGLLILAFIAVTVFVYR
WYYRTPKGRYVIDDIKLRMPVFGNLIQKSAISSFARTFGLLISSGVNIIESLEITKGTADNAVVEETIENAKNVVVSGDQ
MSSSLATSKVFPPMVVSMVAIGEETGSLDNMLNKVADFYDREVDEAVESLTAAIEPMMIVFLGGIVGLIVAGMFLPMFSI
IGTLSQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=426262 G6R31_RS02000 WP_025567367.1 393394..394614(-) (pilC) [Deinococcus wulumuqiensis R12]
ATGCCGGCCTACGAATATCGCGCCCGGGACCGGGGAGGACGGGTCCTCAAATCCCAGATGGAGGCCGAGTCCGAAGCCCA
GGTCCGCGACGCGCTCCGGGCCCGCAACCTGATGATTCTGGATATCAAGGCCCCCAAGACGGGCCTGAACGCCGACATCA
AGATTCCGGGACTGACCGACCGCCCGCCGGGCCTCAAGCAGGTGGCGGTGTTCAGCAAGCAGCTCGCCACCCTCATCAAC
GCCGGGGTGCCGCTGGTGCAGTCGCTCGCCATCTTGCAGCGTCAGCTCGACAACAAGACGTTCGAGAACGTCATCAAGAA
GGTGCGCGGCGAGGTGGAATCGGGCGTGCCGCTCAGCGAGGCCCTGCAGGAGCACCCCAAGATTTTCGGGCGCCTGTTCA
TCAACCTCGTCCGCGCCGGGGAGACGAGCGGCACGCTCGACACGGTGCTCGACCGCATTGCCGACTTTCAGGAAAAGCAG
CTCGCCCTCCAGGGCAAGATCAAGGGCGCCCTGACCTACCCCACGGTGGTGCTGGTGTTCGCCATCGGCATCACGTACTT
TCTGCTGACCACCATCGTGCCGCAGTTCGCCAGCATCCTGACGCAGCTCAACGCGCCTCTGCCCTTCATCACCCGGATGC
TGATGGCGGTGTCGAGCTTTCTCCAGAATTCCGGCCTGCTGATTCTGGCGTTCATCGCCGTCACCGTCTTCGTCTACCGC
TGGTACTACCGCACGCCGAAGGGCCGCTACGTCATCGACGACATCAAGCTGCGCATGCCGGTGTTCGGAAACCTGATTCA
GAAAAGCGCCATCAGCTCGTTTGCCCGCACCTTCGGCCTGCTCATCAGCAGCGGGGTGAACATCATCGAGTCGCTGGAAA
TCACCAAGGGCACCGCCGACAACGCAGTGGTCGAGGAAACCATCGAGAACGCCAAGAACGTGGTCGTTTCCGGCGACCAG
ATGAGTTCGAGCCTGGCGACGAGCAAGGTCTTTCCGCCGATGGTGGTCAGCATGGTCGCCATCGGGGAAGAAACCGGGTC
GCTCGACAACATGCTGAACAAGGTCGCCGACTTCTACGACCGCGAGGTGGACGAAGCCGTCGAGAGCCTGACCGCCGCCA
TCGAACCCATGATGATCGTGTTTCTAGGCGGCATCGTCGGCCTGATCGTGGCTGGGATGTTCCTGCCGATGTTCAGCATC
ATCGGCACGCTCAGCCAGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

60.099

100

0.601