Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxQ   Type   Regulator
Locus tag   G5S32_RS19635 Genome accession   NZ_CP049332
Coordinates   1045496..1048048 (+) Length   850 a.a.
NCBI ID   WP_343033179.1    Uniprot ID   -
Organism   Vibrio ziniensis strain ZWAL4003     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1039251..1096254 1045496..1048048 within 0


Gene organization within MGE regions


Location: 1039251..1096254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS19590 (G5S32_19590) - 1039990..1040250 (-) 261 WP_165313826.1 YgjV family protein -
  G5S32_RS19595 (G5S32_19595) - 1040513..1040887 (-) 375 WP_165313827.1 hypothetical protein -
  G5S32_RS19600 (G5S32_19600) - 1040903..1041334 (-) 432 WP_165313828.1 VOC family protein -
  G5S32_RS19605 (G5S32_19605) - 1041570..1042043 (-) 474 WP_165313829.1 hypothetical protein -
  G5S32_RS19610 (G5S32_19610) - 1042349..1042666 (-) 318 WP_165313830.1 DUF496 family protein -
  G5S32_RS19615 (G5S32_19615) - 1042855..1043052 (+) 198 WP_165313831.1 hypothetical protein -
  G5S32_RS19620 (G5S32_19620) - 1043098..1043748 (+) 651 WP_165313832.1 YceH family protein -
  G5S32_RS19625 (G5S32_19625) - 1043748..1044041 (+) 294 WP_165313833.1 GIY-YIG nuclease family protein -
  G5S32_RS19630 (G5S32_19630) luxP 1044394..1045482 (+) 1089 WP_165314213.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  G5S32_RS19635 (G5S32_19635) luxQ 1045496..1048048 (+) 2553 WP_343033179.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  G5S32_RS19640 (G5S32_19640) - 1048067..1048735 (-) 669 WP_165313834.1 PilZ domain-containing protein -
  G5S32_RS19645 (G5S32_19645) - 1048870..1049397 (-) 528 WP_246201131.1 hypothetical protein -
  G5S32_RS19650 (G5S32_19650) - 1049604..1051085 (+) 1482 WP_165313835.1 cobyric acid synthase -
  G5S32_RS19655 (G5S32_19655) modA 1051087..1051860 (+) 774 WP_165313836.1 molybdate ABC transporter substrate-binding protein -
  G5S32_RS19660 (G5S32_19660) modB 1051850..1052554 (+) 705 WP_165313837.1 molybdate ABC transporter permease subunit -
  G5S32_RS19665 (G5S32_19665) modC 1052551..1053663 (+) 1113 WP_165313838.1 molybdenum ABC transporter ATP-binding protein ModC -
  G5S32_RS19670 (G5S32_19670) - 1053686..1053973 (-) 288 WP_165313839.1 hypothetical protein -
  G5S32_RS19675 (G5S32_19675) - 1054049..1054210 (-) 162 WP_165313840.1 hypothetical protein -
  G5S32_RS19680 (G5S32_19680) yccS 1054417..1056588 (-) 2172 WP_165314216.1 YccS family putative transporter -
  G5S32_RS19685 (G5S32_19685) helD 1056775..1058838 (+) 2064 WP_165314217.1 DNA helicase IV -
  G5S32_RS19690 (G5S32_19690) pncA 1058850..1059470 (+) 621 WP_165313841.1 bifunctional nicotinamidase/pyrazinamidase -
  G5S32_RS19695 (G5S32_19695) - 1059529..1059984 (-) 456 WP_165313842.1 methylglyoxal synthase -
  G5S32_RS19700 (G5S32_19700) glgC 1060274..1061524 (-) 1251 WP_343033180.1 glucose-1-phosphate adenylyltransferase -
  G5S32_RS19705 (G5S32_19705) - 1061742..1062317 (-) 576 WP_165313844.1 hypothetical protein -
  G5S32_RS19710 (G5S32_19710) - 1062462..1063124 (+) 663 WP_165313845.1 DUF4366 domain-containing protein -
  G5S32_RS19715 (G5S32_19715) - 1063355..1063735 (+) 381 WP_165313846.1 STAS/SEC14 domain-containing protein -
  G5S32_RS19720 (G5S32_19720) - 1063805..1064236 (+) 432 WP_246201132.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  G5S32_RS19725 (G5S32_19725) - 1064312..1064779 (+) 468 WP_165313847.1 OsmC family protein -
  G5S32_RS19730 (G5S32_19730) - 1064796..1065374 (+) 579 WP_165313848.1 DJ-1/PfpI family protein -
  G5S32_RS19735 (G5S32_19735) - 1065408..1066202 (-) 795 WP_165313849.1 EAL domain-containing protein -
  G5S32_RS19740 (G5S32_19740) - 1066536..1067324 (-) 789 WP_165313850.1 lipase -
  G5S32_RS19745 (G5S32_19745) - 1067432..1068067 (-) 636 WP_165313851.1 hypothetical protein -
  G5S32_RS19750 (G5S32_19750) - 1068269..1068517 (+) 249 WP_165313852.1 DUF2164 domain-containing protein -
  G5S32_RS19755 (G5S32_19755) - 1068689..1069222 (+) 534 WP_165313853.1 cytochrome b -
  G5S32_RS19760 (G5S32_19760) - 1069225..1069794 (+) 570 WP_165313854.1 YceI family protein -
  G5S32_RS19765 (G5S32_19765) focA 1069893..1071344 (-) 1452 WP_165313855.1 formate transporter FocA -
  G5S32_RS19770 (G5S32_19770) - 1071561..1072466 (+) 906 WP_165313856.1 LysR substrate-binding domain-containing protein -
  G5S32_RS19775 (G5S32_19775) - 1072692..1073186 (+) 495 WP_165313857.1 DUF1097 domain-containing protein -
  G5S32_RS19780 (G5S32_19780) - 1073311..1074942 (-) 1632 WP_165313858.1 ATP-dependent endonuclease -
  G5S32_RS19785 (G5S32_19785) - 1075192..1076937 (+) 1746 WP_165313859.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  G5S32_RS19790 (G5S32_19790) - 1077409..1078377 (+) 969 WP_165314219.1 TerC/Alx family metal homeostasis membrane protein -
  G5S32_RS19795 (G5S32_19795) - 1078690..1078881 (+) 192 WP_165313860.1 hypothetical protein -
  G5S32_RS19800 (G5S32_19800) - 1079010..1079576 (-) 567 WP_165313861.1 PhnA domain-containing protein -
  G5S32_RS19805 (G5S32_19805) - 1079747..1080829 (+) 1083 WP_165313862.1 site-2 protease family protein -
  G5S32_RS19810 (G5S32_19810) - 1080872..1081663 (-) 792 WP_165313863.1 M48 family metallopeptidase -
  G5S32_RS19815 (G5S32_19815) - 1081757..1082209 (+) 453 WP_165313864.1 hotdog fold thioesterase -
  G5S32_RS19820 (G5S32_19820) - 1082210..1082443 (+) 234 WP_165313865.1 DUF3389 domain-containing protein -
  G5S32_RS19825 (G5S32_19825) - 1082525..1084213 (+) 1689 WP_165313866.1 SgrR family transcriptional regulator -
  G5S32_RS19830 (G5S32_19830) - 1084241..1084473 (+) 233 Protein_988 hypothetical protein -
  G5S32_RS19835 (G5S32_19835) - 1085006..1085893 (+) 888 WP_165313867.1 LysR family transcriptional regulator -
  G5S32_RS19840 (G5S32_19840) - 1085944..1088628 (-) 2685 WP_165313868.1 bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase -
  G5S32_RS19845 (G5S32_19845) - 1088844..1089446 (+) 603 WP_165313869.1 SPOR domain-containing protein -
  G5S32_RS19850 (G5S32_19850) - 1089597..1090601 (+) 1005 WP_165313870.1 D-alanine--D-alanine ligase -
  G5S32_RS19855 (G5S32_19855) - 1090585..1091544 (-) 960 WP_165313871.1 tyrosine-type recombinase/integrase -
  G5S32_RS19860 (G5S32_19860) - 1091645..1092025 (+) 381 WP_165313872.1 DUF3319 domain-containing protein -
  G5S32_RS19865 (G5S32_19865) yciH 1092027..1092338 (+) 312 WP_165313873.1 stress response translation initiation inhibitor YciH -
  G5S32_RS19870 (G5S32_19870) - 1092481..1093631 (+) 1151 WP_165313874.1 IS3 family transposase -
  G5S32_RS19875 (G5S32_19875) - 1094083..1094451 (-) 369 WP_165313875.1 DUF3693 domain-containing protein -
  G5S32_RS19880 (G5S32_19880) - 1094585..1094803 (+) 219 WP_165313876.1 hypothetical protein -
  G5S32_RS19885 (G5S32_19885) - 1094787..1095926 (+) 1140 WP_165313877.1 replication initiation factor domain-containing protein -

Sequence


Protein


Download         Length: 850 a.a.        Molecular weight: 95863.90 Da        Isoelectric Point: 5.6933

>NTDB_id=426176 G5S32_RS19635 WP_343033179.1 1045496..1048048(+) (luxQ) [Vibrio ziniensis strain ZWAL4003]
MVRSIHSIKPKKKIASFISHAIVVALGTLIIMVLFQSYQISSRLISQEVVRTSKQTSSLIQSLFDFRLATLQIHQDSSAK
NSTLVQAIHSGKEVELDQYFLTVDQLELSNTPDIRFITSQKDMLWDDGNSQFYGIETKELGKIVRRVSISSNWHLIKSPS
QLGPTYLLVRRSSIVDPATGEVLGFLYVSIVLNDNYALIETIKDNSNAQNLVLAVDDNVLASTLNGNELYTTHDIIHSVA
GESLDDKNIVSKNMLEVEGVPTYLSVFSVQSNQNALKLRDSYYFWIVFALIALLAVTIVTRWWLHRNIKREIDQLMSYTH
KVAVQGKEYFFPGSAIYEFDHFGRTLENTFQRLAEQEKQFEDLFNFSLTPIILWSTDGYIIRMNPAAQKEFIGSKGESKR
LFRALEKQLVPDIQTAATGDISKEVMTEIDKKVFRWSISPIVIENKIESIITQGQDVTSFAEAEKQSRIARKEAEESARV
RADFLAKMSHELRTPLNGILGVSQLLKRSVTNPEQIDQINVLCSSGEHLLAVLNDILDFSKIEQGQFRIANSEFPLINVV
CAIEQIYKPMCDDKGLEFKLESDIDAAVVVNSNQVRLNQILYNIINNALKFTCQGMISVRLSLQYGDPDQLHVTVKDTGI
GIKESDLKIIFEPFMQAEPTTTREYGGSGLGLTIVHSLVEMLGGTIKVSSEFGQGTEFNIYLPLEVVSRKTNLATKQEET
KRFALFNKTLKVLLVEDNHTNAFIAKAFCEKYGMKVEWVKDGMQAIEKAKSEQYDIVLMDNQLPFLDGVDATKVLKQEMQ
LSTPVFACTADGMESTQQAFLAAGAEYVIVKPIREDSLYRALLHYKENYC

Nucleotide


Download         Length: 2553 bp        

>NTDB_id=426176 G5S32_RS19635 WP_343033179.1 1045496..1048048(+) (luxQ) [Vibrio ziniensis strain ZWAL4003]
GTGGTCAGAAGTATCCATTCAATAAAGCCGAAGAAAAAAATTGCATCATTTATTAGCCATGCGATTGTTGTTGCTCTTGG
TACTTTGATCATTATGGTGTTGTTTCAGAGCTACCAAATTAGTAGTCGTTTGATCTCACAGGAAGTGGTTAGAACTTCAA
AACAGACTTCCAGTCTAATTCAGAGTCTTTTTGATTTTCGCTTGGCGACATTGCAGATACACCAAGATAGTAGTGCGAAA
AACTCAACGTTAGTCCAAGCTATTCATAGTGGAAAAGAAGTAGAACTCGACCAGTATTTTTTAACGGTAGATCAACTTGA
ACTTTCAAATACGCCTGACATTCGTTTTATAACGAGTCAAAAAGATATGCTATGGGATGATGGCAATTCTCAGTTTTATG
GGATTGAAACTAAAGAACTTGGAAAAATTGTTCGTCGTGTCTCAATTAGTAGTAATTGGCATCTGATTAAAAGCCCATCC
CAACTTGGTCCTACTTATCTATTAGTCAGACGTTCTTCAATTGTTGATCCAGCCACAGGGGAAGTTCTTGGTTTCCTTTA
TGTGTCGATAGTACTTAATGATAATTACGCACTTATTGAAACTATTAAAGATAATAGTAATGCGCAGAATCTAGTGTTAG
CGGTTGACGATAACGTTCTAGCTTCAACTCTTAATGGCAATGAGCTCTATACCACGCATGACATTATTCATAGCGTTGCG
GGTGAGTCTTTAGACGATAAAAATATTGTCAGTAAAAACATGTTAGAAGTAGAAGGGGTTCCTACCTATCTTTCGGTATT
TTCGGTACAGAGTAACCAGAATGCACTTAAGCTAAGAGACAGTTATTATTTTTGGATTGTCTTCGCATTAATTGCATTGT
TAGCTGTAACTATCGTGACTCGCTGGTGGCTGCATAGAAACATTAAGCGTGAAATTGATCAGCTAATGTCTTATACCCAC
AAAGTTGCGGTACAAGGAAAAGAATACTTTTTCCCTGGTTCTGCTATTTATGAATTTGATCATTTTGGGCGTACATTAGA
AAACACCTTCCAGCGCTTAGCTGAACAAGAGAAGCAGTTTGAAGACCTATTTAACTTCTCTCTTACCCCCATTATTTTAT
GGTCTACTGATGGGTACATCATTCGAATGAATCCCGCGGCTCAAAAAGAGTTCATAGGTTCAAAAGGCGAAAGTAAGAGA
TTATTTAGAGCGTTAGAAAAGCAATTAGTGCCAGATATTCAAACCGCAGCAACAGGTGATATTTCGAAAGAAGTCATGAC
TGAAATTGATAAGAAAGTATTCCGTTGGAGTATTTCACCAATTGTTATTGAAAACAAAATTGAATCTATTATCACACAAG
GTCAGGACGTTACGAGCTTTGCCGAAGCGGAAAAGCAAAGCCGTATAGCAAGAAAAGAAGCCGAAGAGTCAGCAAGAGTT
CGAGCAGACTTTTTAGCTAAAATGAGCCATGAATTACGTACACCGTTAAATGGTATTTTAGGCGTATCTCAATTACTTAA
ACGTTCAGTTACCAATCCGGAGCAGATAGATCAAATCAATGTGTTGTGCAGTAGTGGAGAACACTTACTCGCAGTACTTA
ACGATATTCTGGATTTTTCGAAAATTGAGCAAGGGCAATTCCGTATTGCGAATTCAGAATTTCCGTTAATCAATGTTGTT
TGTGCTATTGAGCAAATATACAAACCAATGTGTGACGATAAGGGGCTAGAATTCAAACTAGAGTCAGATATTGATGCTGC
AGTTGTCGTTAACAGTAATCAGGTTCGGTTAAACCAAATCTTATATAACATCATCAATAACGCTCTGAAGTTTACTTGCC
AAGGAATGATTAGTGTTCGTCTATCGTTACAATATGGCGATCCAGACCAACTGCATGTCACAGTCAAAGATACTGGTATT
GGCATAAAAGAATCGGATCTTAAAATTATATTTGAACCCTTTATGCAGGCAGAGCCAACGACTACACGTGAATATGGAGG
TAGTGGGTTAGGTCTGACCATTGTTCATAGCTTGGTTGAAATGCTTGGCGGAACGATCAAAGTCAGTTCTGAGTTTGGTC
AAGGAACTGAATTCAATATTTATTTACCACTAGAAGTGGTTTCGCGAAAAACGAATTTGGCCACTAAGCAAGAAGAAACG
AAACGCTTTGCCTTGTTTAACAAAACCCTGAAAGTACTACTGGTTGAAGATAACCATACAAACGCCTTTATTGCTAAAGC
ATTCTGTGAAAAATATGGGATGAAAGTGGAATGGGTAAAAGATGGTATGCAAGCAATTGAGAAAGCAAAGTCTGAACAAT
ATGATATTGTTTTAATGGACAATCAACTGCCGTTTCTTGACGGTGTCGATGCAACTAAAGTGCTAAAACAGGAAATGCAG
CTAAGCACGCCAGTTTTTGCCTGTACTGCCGACGGTATGGAATCAACTCAGCAAGCATTTTTGGCTGCTGGTGCAGAGTA
TGTGATCGTTAAACCCATTCGAGAAGATAGCTTGTATCGAGCGTTGCTCCATTATAAAGAAAACTATTGCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxQ Vibrio cholerae strain A1552

60.617

99.176

0.601