Detailed information NTG0426165

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G5S32_RS12245
• Genome accession: NZ_CP049331
• Coordinates: 2661032..2662030 (-)
• Length: 332 a.a.
• NCBI ID: WP_165312268.1
• Uniprot ID: A0A6G7CKQ8
• Organism: Vibrio ziniensis strain ZWAL4003
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2656032..2667030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G5S32_RS12235 (G5S32_12235)	cysM	2657075..2657965 (+)	891	WP_165312266.1	cysteine synthase CysM	-
G5S32_RS12240 (G5S32_12240)	mutS	2658242..2660827 (+)	2586	WP_165312267.1	DNA mismatch repair protein MutS	-
G5S32_RS12245 (G5S32_12245)	rpoS	2661032..2662030 (-)	999	WP_165312268.1	RNA polymerase sigma factor RpoS	Regulator
G5S32_RS12250 (G5S32_12250)	-	2662102..2663172 (-)	1071	WP_165312269.1	peptidoglycan DD-metalloendopeptidase family protein	-
G5S32_RS12255 (G5S32_12255)	-	2663172..2663798 (-)	627	WP_165312270.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
G5S32_RS12260 (G5S32_12260)	surE	2663791..2664558 (-)	768	WP_165312271.1	5'/3'-nucleotidase SurE	-
G5S32_RS12265 (G5S32_12265)	truD	2664551..2665597 (-)	1047	WP_165312272.1	tRNA pseudouridine(13) synthase TruD	-
G5S32_RS12270 (G5S32_12270)	ispF	2665608..2666084 (-)	477	WP_165312273.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G5S32_RS12275 (G5S32_12275)	ispD	2666081..2666782 (-)	702	WP_165312274.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 38216.10 Da
• Isoelectric Point: 4.3354

>NTDB_id=426165 G5S32_RS12245 WP_165312268.1 2661032..2662030(-) (rpoS) [Vibrio ziniensis strain ZWAL4003]
MSISNTVTKEEEFDLDIDSTDIVEVDVKLTAEDDDIDQTEDIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARR
ALRGDEAARRRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQT
RTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDIN
NSDPEVSTQDDDIRDSLIEWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGL
NMESLFNVEVEA

Nucleotide

• Length: 999 bp

>NTDB_id=426165 G5S32_RS12245 WP_165312268.1 2661032..2662030(-) (rpoS) [Vibrio ziniensis strain ZWAL4003]
ATGAGTATCAGCAATACAGTAACCAAGGAAGAAGAGTTTGACTTAGACATTGATTCAACAGACATTGTTGAAGTTGACGT
AAAGCTCACTGCCGAAGATGATGACATTGACCAAACGGAAGATATCCGTGAAGAGTTCGATGCTTCAACCAAAAGCTTAG
ATGCAACTCAGATGTATCTCAGCGAGATTGGTTTCTCACCTCTTTTAACTGCCGAAGAAGAAGTTCTTTATGCTCGACGA
GCTCTTCGTGGAGACGAAGCTGCGAGACGTCGCATGATCGAAAGTAACTTACGCTTGGTGGTGAAAATTTCTCGTCGCTA
TAGTAATCGCGGTCTGGCGTTACTGGATCTTATTGAAGAAGGTAACTTGGGCTTGATCCGTGCGGTTGAAAAATTCGATC
CAGAACGCGGATTCCGTTTTTCAACTTATGCAACTTGGTGGATCCGTCAAACGATCGAACGTGCGCTGATGAACCAAACT
CGCACAATTCGTCTACCAATACACGTGGTTAAAGAGCTCAATATCTACCTACGTACCGCGCGTGAACTTTCGCAAAAACT
CGATCACGAGCCAACTGCAGAAGAGATCGCGGTTGAGCTCGACAAACCGGTTGATGATGTCAGCAAGATGCTGCGTTTAA
ATGAACGTATTAGCTCTGTTGATACTCCGATTGGCGGTGACGGGGATAAAGCGCTACTCGATATTATTCCTGATATTAAC
AACTCCGACCCTGAAGTTTCGACTCAAGACGATGATATTCGTGATTCGTTGATTGAGTGGCTGGAAGAGCTAAACCCTAA
ACAAAAAGAAGTGTTAGCTCGACGCTTTGGTTTACTAGGTTATGAGCCTTCGACTCTGGAAGAAGTTGGACGTGAAATTA
ACCTCACTCGTGAACGAGTTCGTCAAATTCAAGTTGAAGGCTTACGTCGTTTAAGAGAGATTTTGGTAAAACAAGGTCTA
AATATGGAATCGCTTTTCAACGTAGAAGTTGAAGCTTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (172-245)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (54-87)

• Sigma-70 region 2 (Sigma70_r2) (92-161)

• Sigma-70, region 4 (Sigma70_r4) (260-313)

3D structure

• AlphaFold DB: A0A6G7CKQ8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	86.747	100	0.867