Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G5S32_RS12105 Genome accession   NZ_CP049331
Coordinates   2634238..2634756 (-) Length   172 a.a.
NCBI ID   WP_165312249.1    Uniprot ID   A0A6G7CKN9
Organism   Vibrio ziniensis strain ZWAL4003     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2629238..2639756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS12080 (G5S32_12080) rimM 2629318..2629872 (-) 555 WP_165312244.1 ribosome maturation factor RimM -
  G5S32_RS12085 (G5S32_12085) rpsP 2629900..2630148 (-) 249 WP_165312245.1 30S ribosomal protein S16 -
  G5S32_RS12090 (G5S32_12090) ffh 2630358..2631743 (-) 1386 WP_165312246.1 signal recognition particle protein -
  G5S32_RS12095 (G5S32_12095) - 2631990..2632784 (+) 795 WP_165312247.1 inner membrane protein YpjD -
  G5S32_RS12100 (G5S32_12100) - 2632885..2634159 (+) 1275 WP_165312248.1 CNNM domain-containing protein -
  G5S32_RS12105 (G5S32_12105) luxS 2634238..2634756 (-) 519 WP_165312249.1 S-ribosylhomocysteine lyase Regulator
  G5S32_RS12110 (G5S32_12110) gshA 2634877..2636442 (-) 1566 WP_165312250.1 glutamate--cysteine ligase -
  G5S32_RS12115 (G5S32_12115) - 2636567..2639422 (-) 2856 WP_165312251.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18968.75 Da        Isoelectric Point: 4.8362

>NTDB_id=426162 G5S32_RS12105 WP_165312249.1 2634238..2634756(-) (luxS) [Vibrio ziniensis strain ZWAL4003]
MPLLDSFTVDHTRMNAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEQQVADAWLASMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAVIAAGISVNRNDELA
LPEEMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=426162 G5S32_RS12105 WP_165312249.1 2634238..2634756(-) (luxS) [Vibrio ziniensis strain ZWAL4003]
ATGCCACTATTAGACAGCTTTACTGTTGACCACACTCGAATGAATGCACCAGCAGTTCGCGTAGCTAAGAACATGCAAAC
CCCTAAAGGCGATACTATTACTGTTTTTGATTTGCGCTTCACTGCACCAAACAAAGACATTTTGTCTGAGAAAGGTATCC
ATACTCTTGAGCACTTATACGCGGGTTTCATGCGTGCACATTTGAATGGTGCAAACGTAGAAATCATCGATATTTCGCCT
ATGGGCTGTCGTACAGGTTTCTACATGAGCTTAATCGGGGCTCCAAGTGAACAGCAAGTTGCTGATGCATGGCTTGCTTC
GATGCAAGACGTACTGAAAGTGGAATCGCAAAACAAGATCCCTGAGTTAAACGAATATCAATGTGGTACTGCGGCAATGC
ATTCACTTGAAGAAGCGAAACAAATTGCTCAGGCTGTGATTGCTGCAGGGATCAGTGTAAACCGTAATGATGAGCTAGCT
TTGCCAGAAGAGATGCTGAAAGAGCTGAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CKN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.058

99.419

0.895