Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G5S32_RS06025 Genome accession   NZ_CP049331
Coordinates   1317972..1319396 (-) Length   474 a.a.
NCBI ID   WP_165311162.1    Uniprot ID   A0A6G7CHQ5
Organism   Vibrio ziniensis strain ZWAL4003     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312972..1324396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS06005 (G5S32_06005) - 1312991..1315723 (+) 2733 WP_246201063.1 EAL domain-containing protein -
  G5S32_RS06010 (G5S32_06010) cdd 1315793..1316680 (-) 888 WP_165311160.1 cytidine deaminase -
  G5S32_RS06015 (G5S32_06015) - 1316882..1317559 (-) 678 WP_165312726.1 LrgB family protein -
  G5S32_RS06020 (G5S32_06020) - 1317559..1317924 (-) 366 WP_165311161.1 CidA/LrgA family protein -
  G5S32_RS06025 (G5S32_06025) sbcB 1317972..1319396 (-) 1425 WP_165311162.1 exodeoxyribonuclease I Machinery gene
  G5S32_RS06030 (G5S32_06030) - 1319539..1320255 (-) 717 WP_165311163.1 NAD(P)H-binding protein -
  G5S32_RS06035 (G5S32_06035) cobT 1320422..1321450 (+) 1029 WP_165311164.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  G5S32_RS06040 (G5S32_06040) - 1321450..1322250 (+) 801 WP_165311165.1 adenosylcobinamide-GDP ribazoletransferase -
  G5S32_RS06045 (G5S32_06045) cobU 1322247..1322786 (+) 540 WP_165311166.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  G5S32_RS06050 (G5S32_06050) - 1323066..1324094 (+) 1029 WP_165311167.1 succinylglutamate desuccinylase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54843.18 Da        Isoelectric Point: 5.1612

>NTDB_id=426159 G5S32_RS06025 WP_165311162.1 1317972..1319396(-) (sbcB) [Vibrio ziniensis strain ZWAL4003]
MQQEHLPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPAPEAALITGITPQKAMAQGLSEP
EFIARIHNELSQPNTTSLGYNSIRFDDEVTRYTCYRNFFDPYSWSWQNNNSRWDLLDIMRACHALRPEGIAWPENEEGFA
SFKLEHLSKANGIEHENAHDAMADVIATIELAKRVKAAQPKLFDYFFTMRHKRKLTELVDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKNPQPLIDLSSEELHTRLYTKHDELAPDELPVPVKLVHLNKCPILAPAKTLTAENAD
KIGINREQCLANLALIRQHPEIREKLVVLFSIDREYEQSNDVDTQLYDGFFSPADKAAMDIIRNTPPENLGALDITFADK
RIEPLLFRYRARHYPWTLDETEQRRWANHCRDFYESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=426159 G5S32_RS06025 WP_165311162.1 1317972..1319396(-) (sbcB) [Vibrio ziniensis strain ZWAL4003]
ATGCAGCAGGAACACTTGCCAACATACTTCTTTTTTGACTACGAAACTTGGGGCACTAGCCCAGCGAAAGATCGTCCTAG
TCAGTTTGCTGGCGTACGCACCGATATGGATTTCAATATTATCGGAGAACCATTAGTTATCTACTGCCAATTACCTTCCG
ATTATTTGCCAGCGCCGGAAGCCGCGTTGATTACAGGTATTACGCCGCAAAAAGCCATGGCACAAGGGTTATCTGAGCCC
GAATTCATCGCGCGCATCCACAACGAACTGTCTCAACCGAATACCACTAGCCTTGGTTACAACAGCATTCGATTTGATGA
CGAAGTGACCCGTTATACTTGCTATCGCAACTTTTTCGATCCGTACTCTTGGAGTTGGCAGAACAACAATTCACGTTGGG
ACTTACTGGACATCATGCGTGCTTGTCATGCCCTTCGTCCAGAAGGCATTGCGTGGCCAGAGAACGAAGAGGGATTTGCT
AGCTTCAAACTTGAACATCTATCTAAAGCTAATGGCATAGAACATGAAAATGCACACGATGCAATGGCAGACGTTATTGC
TACCATCGAACTAGCAAAAAGGGTAAAAGCAGCTCAACCAAAGTTGTTTGATTACTTCTTTACCATGCGCCACAAACGCA
AACTCACTGAACTCGTAGATATCGTCAACATGACACCTCTCATGCATGTCTCTGGCATGTTAGGCAGAGAGTGCCAATAT
ACAAGTTGGATCGTGCCTATTGCTTGGCATCCCACCAATCAAAATGCAGTGATAGTGGCGGACTTAGCGAAGAATCCACA
ACCTTTGATTGATTTGTCTAGCGAAGAGCTTCACACGCGTCTTTATACAAAACATGATGAACTGGCACCTGATGAACTCC
CAGTCCCAGTGAAGCTAGTGCATCTAAATAAATGCCCTATTCTCGCGCCTGCAAAGACGCTCACCGCCGAGAATGCCGAC
AAAATTGGTATTAACCGTGAGCAGTGTTTAGCTAATTTGGCGCTGATTCGTCAGCATCCAGAAATCAGAGAAAAACTGGT
GGTACTGTTTTCAATCGATCGTGAATATGAACAAAGCAATGATGTCGATACTCAGCTGTACGATGGTTTCTTCTCACCAG
CTGACAAGGCTGCAATGGATATCATACGTAACACGCCACCAGAAAACTTAGGTGCTCTGGACATTACTTTCGCGGATAAA
CGCATCGAACCGCTACTGTTTCGTTATCGAGCTCGTCATTATCCTTGGACTTTGGATGAGACAGAGCAGCGACGCTGGGC
TAATCATTGCCGTGATTTTTATGAATCACGCATTGAAGATTACATGCTCAATTTAGAGAACTTAGTTCATGAGCATGAGA
GTGACGAAAAGAAAATCGCTATTTTAAAATCCGTTTATCAATACGTCGAAAAACTCGTTTCCTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CHQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

82.664

99.789

0.825