Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   G5S32_RS04250 Genome accession   NZ_CP049331
Coordinates   936116..937516 (+) Length   466 a.a.
NCBI ID   WP_165310645.1    Uniprot ID   A0A6G7CGN7
Organism   Vibrio ziniensis strain ZWAL4003     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 931116..942516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS04245 (G5S32_04245) uvrB 933642..935672 (+) 2031 WP_165310643.1 excinuclease ABC subunit UvrB -
  G5S32_RS04250 (G5S32_04250) luxO 936116..937516 (+) 1401 WP_165310645.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  G5S32_RS04255 (G5S32_04255) luxU 937516..937866 (+) 351 WP_165310647.1 quorum-sensing phosphorelay protein LuxU -
  G5S32_RS04260 (G5S32_04260) - 937930..938820 (-) 891 WP_165310649.1 YvcK family protein -
  G5S32_RS04265 (G5S32_04265) moaA 939208..940197 (+) 990 WP_165310651.1 GTP 3',8-cyclase MoaA -
  G5S32_RS04270 (G5S32_04270) moaB 940289..940795 (+) 507 WP_165310653.1 molybdenum cofactor biosynthesis protein B -
  G5S32_RS04275 (G5S32_04275) moaC 940808..941287 (+) 480 WP_102962741.1 cyclic pyranopterin monophosphate synthase MoaC -
  G5S32_RS04280 (G5S32_04280) moaD 941284..941529 (+) 246 WP_165310655.1 molybdopterin synthase sulfur carrier subunit -
  G5S32_RS04285 (G5S32_04285) moaE 941531..941986 (+) 456 WP_165310657.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52157.48 Da        Isoelectric Point: 5.5633

>NTDB_id=426151 G5S32_RS04250 WP_165310645.1 936116..937516(+) (luxO) [Vibrio ziniensis strain ZWAL4003]
MQHNYTPQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAAREPDLILLDLRLPDMTGMDVLHEVKQKS
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDGINNQNYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAASDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RSDDVIEIAYSLLGYMSKEEGKGFVRLSPEVVERFKRYEWPGNVRQLQNVLRNVVVLNDGKEISQEMLPPPLNFPQQRNE
PAEQPNSSTITVHEIFPLWMTEKQAIEKAIEACDGNIPKAAGYLDVSPSTLYRKLQTWNEKEKESR

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=426151 G5S32_RS04250 WP_165310645.1 936116..937516(+) (luxO) [Vibrio ziniensis strain ZWAL4003]
ATGCAACACAATTACACACCACAAAAAGCAAAATACTTATTGATGGTGGAAGATACGGCGTCTGTGGCGGCGTTGTATCG
TTCTTACCTCACTCCACTTGAAATAGACATCAATATCGTCGGCACTGGGCGCGAGGCGATTGAAAGCATTGCGGCGCGAG
AACCTGATTTAATTCTTCTCGATCTCAGATTACCAGATATGACCGGCATGGACGTATTGCACGAAGTGAAACAAAAGTCT
CCCGATGTTCCGGTTATTTTCATGACTGCGCACGGCTCTATTGATACAGCGGTTGAGGCTATGCGTCATGGTGCTCAGGA
TTTCTTGATTAAGCCTTGTGAAGCTGATCGTTTACGCGTCACAGTGAACAATGCGATTCGTAAAGCCAGTAAGCTTAAGA
ATGATGTTGATGGTATTAATAACCAAAACTATCAAGGCTTTATTGGCAGTAGTCAAACCATGCAAGCGGTTTACCGGACT
ATAGACTCAGCAGCGAGCAGTAAAGCGAGTATCTTTATCACTGGAGAAAGTGGTACGGGTAAAGAAGTGTGTGCAGAAGC
GATTCATGCAGCGAGCAAACGTGGCGATAAGCCGTTTATTGCTATTAACTGTGCCGCGATTCCCAAAGACCTCATTGAGA
GTGAACTATTTGGCCACGTAAAGGGGGCCTTTACGGGGGCTGCTTCAGATCGCCAAGGGGCGGCTGAATTGGCCGACGGT
GGCACGCTGTTTCTCGATGAATTGTGCGAAATGGATCTAGAATTGCAGACAAAATTGCTGCGCTTTATTCAGACCGGTAC
GTTTCAAAAAGTCGGTTCTTCTAAGATGAAAAGCGTGGATGTACGATTTGTTTGCGCTACCAACCGAGATCCATGGAAGG
AAGTGCAGGAAGGTCGTTTTAGGGAAGACTTGTATTACCGTCTTTATGTGATTCCTTTGCATCTACCACCTTTACGTGAA
CGTAGCGATGACGTTATTGAAATCGCTTATTCGCTATTGGGTTATATGTCAAAAGAAGAAGGCAAAGGTTTTGTGCGTTT
GTCTCCAGAAGTGGTTGAACGCTTTAAACGCTATGAGTGGCCGGGTAACGTTCGTCAATTGCAGAACGTATTGCGTAACG
TTGTGGTACTGAATGATGGTAAAGAAATATCACAAGAGATGTTACCACCGCCATTGAACTTTCCTCAGCAGCGCAATGAA
CCTGCCGAACAGCCAAACAGCAGTACGATAACGGTACATGAGATATTTCCTCTTTGGATGACAGAAAAGCAAGCTATCGA
AAAAGCGATAGAAGCTTGTGATGGCAACATTCCGAAAGCGGCTGGGTATTTGGATGTCAGTCCTTCAACGCTATACAGAA
AGCTACAAACGTGGAATGAAAAAGAAAAGGAAAGCAGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CGN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.062

96.137

0.856