Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   G6536_RS13790 Genome accession   NZ_CP049330
Coordinates   2665912..2666541 (-) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis strain CP6     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2660912..2671541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS13765 (G6536_13960) rpsT 2661126..2661392 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  G6536_RS13770 (G6536_13965) holA 2661454..2662497 (-) 1044 WP_003183684.1 DNA polymerase III subunit delta -
  G6536_RS13775 (G6536_13970) - 2662727..2662858 (+) 132 WP_003183686.1 YqzM family protein -
  G6536_RS13780 (G6536_13975) - 2662883..2665270 (-) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  G6536_RS13785 (G6536_13980) - 2665274..2665843 (-) 570 WP_003183690.1 ComE operon protein 2 -
  G6536_RS13790 (G6536_13985) comEA 2665912..2666541 (-) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  G6536_RS13795 (G6536_13990) comER 2666625..2667446 (+) 822 WP_003183696.1 late competence protein ComER -
  G6536_RS13800 (G6536_13995) - 2667516..2668271 (-) 756 WP_003183697.1 class I SAM-dependent methyltransferase -
  G6536_RS13805 (G6536_14000) rsfS 2668268..2668624 (-) 357 WP_003183699.1 ribosome silencing factor -
  G6536_RS13810 (G6536_14005) yqeK 2668638..2669201 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  G6536_RS13815 (G6536_14010) - 2669191..2669760 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  G6536_RS13820 (G6536_14015) yhbY 2669779..2670069 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  G6536_RS13825 (G6536_14020) aroE 2670063..2670899 (-) 837 WP_207185235.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=426109 G6536_RS13790 WP_003183693.1 2665912..2666541(-) (comEA) [Bacillus licheniformis strain CP6]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=426109 G6536_RS13790 WP_003183693.1 2665912..2666541(-) (comEA) [Bacillus licheniformis strain CP6]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526