Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   G6536_RS09945 Genome accession   NZ_CP049330
Coordinates   1944145..1944348 (+) Length   67 a.a.
NCBI ID   WP_003182112.1    Uniprot ID   A0A5Q3BNZ5
Organism   Bacillus licheniformis strain CP6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939145..1949348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS09925 (G6536_10050) - 1941366..1942127 (-) 762 WP_003182101.1 N-acetylmuramoyl-L-alanine amidase -
  G6536_RS09935 (G6536_10060) - 1942660..1943142 (-) 483 WP_003182102.1 DMT family transporter -
  G6536_RS09940 (G6536_10065) - 1943165..1943617 (-) 453 WP_003182104.1 DMT family transporter -
  G6536_RS09945 (G6536_10075) rok 1944145..1944348 (+) 204 WP_003182112.1 hypothetical protein Regulator
  G6536_RS09950 (G6536_10080) - 1944562..1945185 (+) 624 WP_009328434.1 TetR/AcrR family transcriptional regulator -
  G6536_RS09955 (G6536_10085) - 1945188..1945574 (+) 387 WP_009328433.1 OsmC family protein -
  G6536_RS09960 (G6536_10090) - 1945607..1946956 (+) 1350 WP_011198001.1 cytosine permease -
  G6536_RS09965 (G6536_10095) - 1946981..1949086 (+) 2106 WP_011201659.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 8116.34 Da        Isoelectric Point: 9.8619

>NTDB_id=426096 G6536_RS09945 WP_003182112.1 1944145..1944348(+) (rok) [Bacillus licheniformis strain CP6]
MFNEREALRLRLEQLNNAEIQIIRELQSERKDIYSRLRELDRQKVSSSHHKKTLLELVDETVNLLKK

Nucleotide


Download         Length: 204 bp        

>NTDB_id=426096 G6536_RS09945 WP_003182112.1 1944145..1944348(+) (rok) [Bacillus licheniformis strain CP6]
GTGTTCAACGAAAGAGAGGCGCTCCGATTAAGACTGGAGCAACTGAACAATGCCGAGATTCAGATCATACGCGAACTCCA
AAGTGAGCGGAAAGACATTTATTCCAGGCTGCGGGAATTAGATCGTCAAAAAGTTTCTTCATCACATCATAAAAAAACTT
TATTAGAGTTAGTCGATGAAACTGTAAATCTCTTGAAAAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q3BNZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

70.213

70.149

0.493