Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   G6536_RS05880 Genome accession   NZ_CP049330
Coordinates   1158817..1159395 (+) Length   192 a.a.
NCBI ID   WP_003180354.1    Uniprot ID   A0A1Y0YMJ8
Organism   Bacillus licheniformis strain CP6     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1153817..1164395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS05860 (G6536_05955) - 1154319..1155611 (-) 1293 WP_003180349.1 globin-coupled sensor protein -
  G6536_RS05865 (G6536_05960) - 1155718..1157247 (-) 1530 WP_003180351.1 FAD-dependent oxidoreductase -
  G6536_RS05870 (G6536_05965) - 1157388..1158245 (+) 858 WP_003180352.1 SDR family oxidoreductase -
  G6536_RS05875 (G6536_05970) - 1158311..1158544 (-) 234 WP_003180353.1 IDEAL domain-containing protein -
  G6536_RS05880 (G6536_05975) comK 1158817..1159395 (+) 579 WP_003180354.1 competence protein ComK Regulator
  G6536_RS05885 (G6536_05980) - 1159389..1159754 (-) 366 WP_003180357.1 hypothetical protein -
  G6536_RS05890 (G6536_05985) - 1159963..1160574 (+) 612 WP_003180359.1 TVP38/TMEM64 family protein -
  G6536_RS05895 (G6536_05990) lepB 1160587..1161105 (+) 519 WP_145645330.1 signal peptidase I -
  G6536_RS05900 (G6536_05995) - 1161234..1163009 (-) 1776 WP_207185294.1 S8 family peptidase -
  G6536_RS05905 (G6536_06000) - 1163588..1163815 (+) 228 WP_123032305.1 JAB domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22432.65 Da        Isoelectric Point: 8.6274

>NTDB_id=426077 G6536_RS05880 WP_003180354.1 1158817..1159395(+) (comK) [Bacillus licheniformis strain CP6]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSISSFENQVYRTAWLRTKFIDRIEGN
PMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=426077 G6536_RS05880 WP_003180354.1 1158817..1159395(+) (comK) [Bacillus licheniformis strain CP6]
ATGAGCACAGAGGATATGACAAAGGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTTGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAAATTATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAACATTTTTCTTTTCCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCTCATCTTTCGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACAGGATTGAAGGAAAC
CCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAAGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YMJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672