Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SBC2_RS06910 Genome accession   NZ_CP049316
Coordinates   1587470..1588858 (+) Length   462 a.a.
NCBI ID   WP_165088888.1    Uniprot ID   A0A6G8NGT4
Organism   Caballeronia sp. SBC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582470..1593858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBC2_RS06890 (SBC2_14250) thiE 1582902..1583528 (-) 627 WP_165088857.1 thiamine phosphate synthase -
  SBC2_RS06895 (SBC2_14260) thiM 1583540..1584487 (-) 948 WP_370469587.1 hydroxyethylthiazole kinase -
  SBC2_RS06900 (SBC2_14270) lplT 1584501..1585808 (-) 1308 WP_165088860.1 lysophospholipid transporter LplT -
  SBC2_RS06905 (SBC2_14280) alr 1586345..1587415 (+) 1071 WP_165088867.1 alanine racemase -
  SBC2_RS06910 (SBC2_14290) radA 1587470..1588858 (+) 1389 WP_165088888.1 DNA repair protein RadA Machinery gene
  SBC2_RS06915 - 1589029..1589292 (+) 264 WP_165088891.1 DUF2866 domain-containing protein -
  SBC2_RS06920 (SBC2_14300) - 1589313..1591250 (-) 1938 WP_165088894.1 ATP-binding cassette domain-containing protein -
  SBC2_RS06925 (SBC2_14310) - 1591430..1591909 (+) 480 WP_165088899.1 glutathione peroxidase -
  SBC2_RS06930 (SBC2_14320) - 1592280..1593047 (+) 768 WP_165088903.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49029.46 Da        Isoelectric Point: 6.9992

>NTDB_id=426048 SBC2_RS06910 WP_165088888.1 1587470..1588858(+) (radA) [Caballeronia sp. SBC2]
MAKVAKVKTLYVCSDCGGQAPKWQGQCPACGAWNTLVESVAESPSAHRFQALAKTSPVQRLSEIEASDVPRFTTGIGEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQSLAEIARERPALYISGEESGAQIALRAQRLGLLGDSGHAAPDLRLLAEIQL
ERIQATIDTERPEVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQTGTAIIMVGHVTKEGNLAGPRVLEHIVDT
VLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSVPGSCVLVTQEGSRPLLVEVQALVD
TAHVPNPRRLAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGE
VGLAGEIRPSPRGQDRLKEAAKLGFSIALIPKANAPKQPIEGLEVIAVDRIEEAIDRVRSLA

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=426048 SBC2_RS06910 WP_165088888.1 1587470..1588858(+) (radA) [Caballeronia sp. SBC2]
GTGGCGAAAGTAGCGAAGGTCAAGACACTATACGTATGCAGTGACTGCGGCGGTCAGGCGCCAAAATGGCAGGGTCAATG
TCCCGCATGCGGAGCGTGGAACACGCTGGTCGAGTCGGTGGCGGAATCGCCCTCGGCGCATCGCTTTCAAGCACTCGCGA
AGACCTCTCCGGTGCAGCGCTTGTCCGAGATCGAAGCGTCGGACGTGCCGCGCTTTACCACGGGCATTGGTGAATTCGAC
CGCGTGCTGGGCGGCGGTCTGGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGCATTGGAAAATCCACGCTGCT
GCTGCAATCGCTGGCGGAGATCGCCCGTGAGCGACCCGCGCTTTATATCAGCGGCGAAGAGTCCGGCGCGCAGATCGCGT
TGCGCGCGCAGCGGCTAGGCCTGCTCGGCGATTCCGGCCACGCAGCGCCCGACTTGCGCTTGCTCGCGGAAATCCAGCTC
GAGCGAATCCAGGCAACTATTGATACAGAACGGCCTGAAGTTGCGGTCATCGATTCAATCCAGACCGTTTATTCCGAAGC
GCTGACTTCTGCGCCAGGATCGGTTGCGCAGGTGCGCGAATGCGCGGCGCAACTCACGCGGATCGCAAAGCAGACGGGCA
CGGCCATCATCATGGTCGGGCACGTGACGAAGGAAGGCAATCTCGCGGGACCGCGCGTGCTCGAACACATCGTGGACACG
GTGCTGTACTTCGAGGGCGATACCCACTCATCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGTTTCGGCGCGGTGAACGA
GCTTGGCGTATTCGCGATGACCGAGCGCGGTTTGCGTGGCGTGGCGAATCCGTCGGCGCTGTTTTTATCGCAGCATGAGC
AGAGCGTGCCGGGCTCGTGCGTGCTGGTGACGCAGGAAGGTTCGCGGCCGTTATTGGTGGAGGTGCAGGCGCTTGTCGAT
ACCGCGCATGTCCCGAATCCGCGCCGTCTCGCCGTAGGGCTGGAGCAGAACCGGCTCGCATTGCTGCTGGCCGTGTTGCA
TAGGCATGCGGGCATTGCGTGCTTCGATCAGGATGTATTCCTGAACGCGGTGGGCGGCGTGAAGATCACGGAACCCGCGG
CCGATCTGGCTGTATTGCTCGCAATCCATTCGTCAATGCGTAACAAGGCGTTGCCCAAGGGTCTGATCGTGTTCGGCGAA
GTAGGGCTGGCGGGTGAAATCAGGCCGTCGCCACGCGGCCAGGATCGCTTGAAGGAGGCCGCGAAACTGGGCTTTTCGAT
CGCGCTGATTCCAAAGGCGAATGCGCCGAAACAGCCTATCGAGGGACTGGAAGTGATTGCAGTCGATCGGATTGAAGAGG
CGATCGATCGCGTGCGTTCGCTGGCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)

AAA domain (AAA_25)

(69-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8NGT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.216

100

0.502
  radA Streptococcus mitis SK321

47.277

99.351

0.47
  radA Streptococcus pneumoniae Rx1

46.97

100

0.47
  radA Streptococcus pneumoniae D39

46.97

100

0.47
  radA Streptococcus pneumoniae R6

46.97

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.97

100

0.47
  radA Streptococcus mitis NCTC 12261

46.943

99.134

0.465