Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   SBC2_RS01670 Genome accession   NZ_CP049316
Coordinates   360334..361860 (-) Length   508 a.a.
NCBI ID   WP_165086021.1    Uniprot ID   A0A6G8NFG9
Organism   Caballeronia sp. SBC2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355334..366860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBC2_RS01645 (SBC2_03310) - 356069..356701 (-) 633 WP_165086013.1 LON peptidase substrate-binding domain-containing protein -
  SBC2_RS01650 (SBC2_03320) rapZ 356736..357632 (-) 897 WP_165086015.1 RNase adapter RapZ -
  SBC2_RS01655 (SBC2_03330) hprK 357726..358694 (-) 969 WP_047895605.1 HPr(Ser) kinase/phosphatase -
  SBC2_RS01660 (SBC2_03340) ptsN 358893..359384 (-) 492 WP_165086018.1 PTS IIA-like nitrogen regulatory protein PtsN -
  SBC2_RS01665 (SBC2_03350) hpf 359802..360161 (-) 360 WP_031357598.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SBC2_RS01670 (SBC2_03360) rpoN/rpoN1 360334..361860 (-) 1527 WP_165086021.1 RNA polymerase factor sigma-54 Machinery gene
  SBC2_RS01675 (SBC2_03370) lptB 362025..362792 (-) 768 WP_165093015.1 LPS export ABC transporter ATP-binding protein -
  SBC2_RS01680 (SBC2_03380) lptA 362804..363502 (-) 699 WP_165086024.1 lipopolysaccharide transport periplasmic protein LptA -
  SBC2_RS01685 (SBC2_03390) lptC 363551..364150 (-) 600 WP_165086027.1 LPS export ABC transporter periplasmic protein LptC -
  SBC2_RS01690 (SBC2_03400) - 364156..364719 (-) 564 WP_165086030.1 HAD family hydrolase -
  SBC2_RS01695 (SBC2_03410) kdsD 364719..365702 (-) 984 WP_165086032.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55923.11 Da        Isoelectric Point: 5.0793

>NTDB_id=426042 SBC2_RS01670 WP_165086021.1 360334..361860(-) (rpoN/rpoN1) [Caballeronia sp. SBC2]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENEDDWTTSPLRVAADGSLITSAGASVNAPDSM
MSNGTSSSSSTSTTDRSENGEPQGVDEYNGMSSSDNGPDSSSWNLEDYGRSNSGSDDDDLPPLQIHESTTTLRDHLASQL
RMTKANQRDRALITFLIESLDEDGYLTSSLEEVKADLPDELEVDVDELSAALALLQSFDPPGVGGRSASECLKLQLLRLE
PTPIRTLALDIVMHHLELLAARDFTRLRKQLKASDDALRDAHLLIRSLEPFPGAVFGKSEADYVVPDILVRKMSSGWTAE
LNPEIVPRLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLR
EIADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDSKSPLSDSRIAELLAE
QGFVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=426042 SBC2_RS01670 WP_165086021.1 360334..361860(-) (rpoN/rpoN1) [Caballeronia sp. SBC2]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCATCTTGCGCTGACCCCACAACTGCAGCAGTCCATCCGGCTGCTGCA
GCTGTCGACGCTTGAGTTGCAGCAGGAAGTCGCGATGGCTGTCGCGCAAAATCCGCTGCTCGAGAACGAGGACGACTGGA
CCACCAGCCCGCTACGCGTGGCGGCGGACGGCTCGCTGATCACCTCGGCGGGGGCATCGGTGAACGCACCCGATTCCATG
ATGAGCAACGGCACGTCGTCGAGCAGCAGCACGAGCACGACTGACCGTTCCGAAAACGGTGAGCCCCAGGGCGTAGACGA
ATACAACGGCATGAGTTCGTCGGACAACGGACCGGATTCGAGCTCGTGGAATCTGGAAGATTACGGCCGCTCGAATAGCG
GTTCGGACGACGACGACCTGCCGCCGCTGCAAATCCACGAATCCACCACTACCCTGCGCGATCACCTGGCGTCGCAACTG
CGCATGACGAAGGCGAATCAGCGCGACCGTGCGCTGATCACATTCCTGATCGAATCGCTCGATGAAGACGGTTACCTCAC
GTCGTCGCTCGAGGAAGTGAAGGCGGATCTGCCGGATGAACTGGAAGTCGATGTCGACGAACTGAGCGCGGCGCTCGCGT
TGCTGCAGAGTTTCGATCCGCCGGGAGTGGGCGGCCGTTCGGCATCCGAATGCCTGAAGCTGCAGTTGTTACGGCTCGAA
CCAACGCCTATTCGTACCCTGGCGCTCGATATTGTGATGCACCATCTGGAACTGCTCGCGGCGCGCGATTTCACGCGTTT
GCGCAAGCAGCTCAAAGCCTCGGACGACGCACTGCGCGACGCCCATTTGCTGATCCGCTCTCTGGAACCGTTCCCCGGCG
CCGTGTTCGGAAAGAGCGAAGCTGATTACGTCGTTCCTGACATCCTGGTGCGCAAGATGTCCAGCGGCTGGACGGCAGAA
TTGAATCCGGAAATCGTGCCAAGGCTTCGCATCAATCACCTCTATGCGAATATTTTGCGCAACAATCGCGGCGACCCGGG
CAGTGGTTCGTTGCGTCAGCAGCTGCAGGAAGCGCGCTGGCTGATCAAGAATATTCAACAAAGATTCGAGACGATTCTTC
GCGTTGCGCAGGCCATTGTGGAGCGTCAAAAGAACTTTTTTGCGCATGGCGAAATTGCAATGCGGCCCTTGGTTTTGAGG
GAGATTGCTGATACGCTGGGTTTACACGAATCCACTGTCTCACGTGTGACAACCGGTAAGTACATGCTGACCCCGTTCGG
GACGCTGGAATTTAAGTACTTCTTCGGATCGCACGTTTCAACCGACACGGGTGGCGCGGCATCGTCCACGGCGATCCGGG
CACTCATCAAGCAACTGATAGGAGCCGAAGACTCAAAATCTCCTCTTTCAGACAGCCGCATCGCAGAGTTGCTGGCAGAA
CAGGGATTCGTGGTCGCGCGCCGTACGGTCGCCAAATATCGCGAAGCTCTGAAAATTCCGGCAGTGAACTTGCGAAAGTC
TCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(351-506)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(145-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8NFG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

65.226

100

0.654