Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SBC2_RS01575 Genome accession   NZ_CP049316
Coordinates   343044..344108 (-) Length   354 a.a.
NCBI ID   WP_370469599.1    Uniprot ID   -
Organism   Caballeronia sp. SBC2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338044..349108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBC2_RS01555 (SBC2_03130) ybiB 339723..340682 (-) 960 WP_165085981.1 DNA-binding protein YbiB -
  SBC2_RS01560 (SBC2_03140) - 341028..341726 (+) 699 WP_165085983.1 fumarylacetoacetate hydrolase family protein -
  SBC2_RS01565 (SBC2_03150) maiA 341748..342392 (+) 645 WP_165085985.1 maleylacetoacetate isomerase -
  SBC2_RS01570 (SBC2_03160) - 342389..343000 (+) 612 WP_165085987.1 LysE/ArgO family amino acid transporter -
  SBC2_RS01575 (SBC2_03170) pilA 343044..344108 (-) 1065 WP_370469599.1 signal recognition particle-docking protein FtsY Machinery gene
  SBC2_RS01580 (SBC2_03180) rsmD 345038..345727 (+) 690 WP_165085990.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SBC2_RS01585 (SBC2_03190) coaD 345888..346391 (+) 504 WP_165085992.1 pantetheine-phosphate adenylyltransferase -
  SBC2_RS01590 (SBC2_03200) - 346515..346772 (+) 258 WP_165085994.1 YfhL family 4Fe-4S dicluster ferredoxin -
  SBC2_RS01595 (SBC2_03210) hisC 346819..347883 (-) 1065 WP_165085997.1 histidinol-phosphate transaminase -
  SBC2_RS01600 (SBC2_03220) pth 347962..348564 (-) 603 WP_062090360.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37803.59 Da        Isoelectric Point: 6.7505

>NTDB_id=426041 SBC2_RS01575 WP_370469599.1 343044..344108(-) (pilA) [Caballeronia sp. SBC2]
MTQAPPASAIPLPASPAAATTPEAKPYWQGRTASQWKAPAETVVIVPPPEPEPNAKRSWLTRLKTGLSKTSSGLTGIFIG
AKIDEDLYEELETALLMSDAGVDATEYLLEALREKVRSERLTDSMQVKAALRSLLADLLRPLEKSLMLGRAQPLVMMIAG
VNGAGKTTSIGKLAKHLQRFDQSVLLAAGDTFRAAAREQLTVWGQRNNVTVVSQESGDAAAVIFDAVGAARARKIDVMMA
DTAGRLPTQLHLMEELRKVKRVIAKAQPDAPHEVLLVIDANTGQNALAQVKSFDDALGLTGLIVTKLDGTAKGGILAAIA
RQRPIPVYFIGVGEKVEDLQPFSADEFADALLGS

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=426041 SBC2_RS01575 WP_370469599.1 343044..344108(-) (pilA) [Caballeronia sp. SBC2]
CTGACGCAAGCCCCGCCTGCGAGCGCAATACCCCTTCCGGCGAGCCCCGCCGCAGCCACCACGCCAGAAGCCAAACCCTA
CTGGCAGGGCCGCACGGCATCGCAATGGAAGGCGCCGGCAGAAACCGTCGTGATCGTGCCGCCGCCGGAACCCGAACCGA
ACGCGAAGCGTTCGTGGCTCACGCGGCTGAAAACCGGGCTATCGAAGACCAGTTCGGGCCTGACGGGGATTTTCATCGGC
GCAAAGATCGATGAGGATTTGTATGAGGAACTTGAAACAGCGCTGCTGATGTCGGATGCCGGTGTCGATGCCACCGAGTA
TCTGCTTGAAGCGCTGCGTGAAAAAGTACGCAGCGAACGGCTTACCGATTCGATGCAGGTCAAGGCCGCACTGCGCTCGC
TGCTCGCAGACCTGCTGCGGCCACTCGAGAAGTCGCTGATGCTCGGTCGCGCCCAACCGCTCGTGATGATGATTGCTGGC
GTGAACGGCGCGGGCAAGACCACGAGCATTGGCAAGCTGGCCAAGCATTTGCAGCGCTTCGACCAGTCCGTGCTGCTCGC
CGCCGGCGACACCTTCCGTGCTGCCGCACGCGAACAGCTCACGGTATGGGGACAACGCAACAACGTGACGGTGGTATCGC
AGGAAAGCGGCGATGCAGCCGCCGTGATCTTCGATGCGGTCGGCGCCGCGCGTGCCCGCAAGATCGACGTGATGATGGCC
GACACAGCGGGCCGCCTGCCCACACAGCTTCATTTGATGGAAGAACTGCGCAAGGTGAAGCGCGTGATCGCAAAGGCGCA
GCCCGACGCGCCGCACGAAGTGCTGCTGGTTATCGACGCAAACACGGGCCAGAACGCGCTCGCCCAAGTGAAGTCTTTCG
ACGATGCGCTGGGCTTGACGGGTTTGATCGTGACCAAGCTCGACGGTACGGCGAAGGGCGGTATTCTCGCGGCCATTGCG
CGGCAGCGGCCGATCCCGGTGTACTTCATTGGCGTGGGCGAGAAAGTCGAGGACTTACAGCCGTTCAGCGCCGACGAATT
CGCGGACGCGTTGCTCGGAAGTTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(72-133)

SRP54-type protein, GTPase domain (SRP54)

(154-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

63.907

85.311

0.545