Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GYO_RS34900 Genome accession   NC_016047
Coordinates   2589964..2590731 (-) Length   255 a.a.
NCBI ID   WP_014114447.1    Uniprot ID   -
Organism   Bacillus spizizenii TU-B-10     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2584964..2595731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS34880 (GYO_2788) - 2585138..2585950 (-) 813 WP_003226219.1 pyruvate, water dikinase regulatory protein -
  GYO_RS34885 (GYO_2789) ccpN 2585976..2586614 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  GYO_RS34890 (GYO_2790) glyS 2586747..2588786 (-) 2040 WP_014114446.1 glycine--tRNA ligase subunit beta -
  GYO_RS34895 (GYO_2791) glyQ 2588779..2589666 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  GYO_RS34900 (GYO_2792) recO 2589964..2590731 (-) 768 WP_014114447.1 DNA repair protein RecO Machinery gene
  GYO_RS34905 (GYO_2793) - 2590768..2590911 (-) 144 WP_003230053.1 YqzL family protein -
  GYO_RS34910 (GYO_2794) era 2591055..2591960 (-) 906 WP_014114448.1 GTPase Era -
  GYO_RS34915 (GYO_2795) - 2591941..2592351 (-) 411 WP_003226204.1 cytidine deaminase -
  GYO_RS34920 (GYO_2797) - 2592472..2592843 (-) 372 WP_014114450.1 diacylglycerol kinase family protein -
  GYO_RS34925 (GYO_2798) ybeY 2592824..2593297 (-) 474 WP_014114451.1 rRNA maturation RNase YbeY -
  GYO_RS34930 (GYO_2799) pgpH 2593298..2595433 (-) 2136 WP_072566562.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29331.06 Da        Isoelectric Point: 8.5539

>NTDB_id=42597 GYO_RS34900 WP_014114447.1 2589964..2590731(-) (recO) [Bacillus spizizenii TU-B-10]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDKGTEEKKPNPYLFEFILESFKQLNEGTDPDVIIFIAQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=42597 GYO_RS34900 WP_014114447.1 2589964..2590731(-) (recO) [Bacillus spizizenii TU-B-10]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTTACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTTTTAATGCAAAAAACAACGGGCCTCGGAACGCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCTTATATTGCTGAGCTAGTCGACAAAGGCACAGAAGAAAAGAAGCC
AAACCCTTATTTGTTTGAATTCATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGATCCGGATGTCATCATCTTCA
TTGCTCAAATGAAGATGCTCGGTGTCATGGGGCTGTACCCTGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACCTTCCATTTTTCTGTTCGTGATAACGGTTTTATTTGCCATCGCTGCTTTGAAAAAGATCCCTACAGGGTTCCAATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATTTGTCGAGGTTGGGCAATGTGTCCTTAAAGCAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTATGAAGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTGATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

96.863

100

0.969

Multiple sequence alignment