Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   G5C61_RS10620 Genome accession   NZ_CP049296
Coordinates   1948452..1950809 (-) Length   785 a.a.
NCBI ID   WP_013059293.1    Uniprot ID   A0A1Q8V101
Organism   Priestia megaterium strain S188     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1943452..1955809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C61_RS10600 alaS 1943761..1946394 (-) 2634 WP_164796531.1 alanine--tRNA ligase -
  G5C61_RS10605 - 1946783..1947844 (-) 1062 WP_057245364.1 AI-2E family transporter -
  G5C61_RS10610 - 1947959..1948093 (-) 135 WP_013059291.1 YrzQ family protein -
  G5C61_RS10615 - 1948119..1948310 (-) 192 WP_013059292.1 hypothetical protein -
  G5C61_RS10620 recD2 1948452..1950809 (-) 2358 WP_013059293.1 ATP-dependent RecD-like DNA helicase Machinery gene
  G5C61_RS10625 - 1950834..1951493 (-) 660 WP_164796532.1 tetratricopeptide repeat protein -
  G5C61_RS10630 mnmA 1951651..1952787 (-) 1137 WP_328139160.1 tRNA 2-thiouridine(34) synthase MnmA -
  G5C61_RS10635 - 1952870..1954012 (-) 1143 WP_164796534.1 cysteine desulfurase family protein -
  G5C61_RS10640 - 1954036..1954452 (-) 417 WP_016765621.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88832.25 Da        Isoelectric Point: 5.0673

>NTDB_id=425938 G5C61_RS10620 WP_013059293.1 1948452..1950809(-) (recD2) [Priestia megaterium strain S188]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=425938 G5C61_RS10620 WP_013059293.1 1948452..1950809(-) (recD2) [Priestia megaterium strain S188]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTGAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTGTCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAACATTGTGGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAACTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGCTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATATGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATCATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTCTTATTGGCTCTGGGTGAACTAGAAGAGCGATTAGACGTGCAATATGCACCTTC
TCAGCGCAAGGGCATACAAACCGCTTTAATGTCTCCGATGCTTCTCTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTCTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGATTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACGGGACGCGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACAAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGATGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTTTGACAGATGTATACAGGCAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTCATTCGTTGTCAAGGACAGCATATCACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTTTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATCACATACCGAGTCGGAGATAAGGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTTAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACTCGAAGC
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTCCGACAAAC
GAATTTACAGCCCTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q8V101

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637