Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   G5C61_RS06935 Genome accession   NZ_CP049296
Coordinates   1238242..1238682 (+) Length   146 a.a.
NCBI ID   WP_164796246.1    Uniprot ID   -
Organism   Priestia megaterium strain S188     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1233242..1243682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C61_RS06915 - 1233798..1234469 (-) 672 WP_164796244.1 response regulator transcription factor -
  G5C61_RS06920 - 1234795..1235613 (+) 819 WP_013058559.1 phytoene/squalene synthase family protein -
  G5C61_RS06925 - 1235649..1237598 (-) 1950 WP_164796245.1 FUSC family protein -
  G5C61_RS06930 - 1237755..1238015 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  G5C61_RS06935 nucA/comI 1238242..1238682 (+) 441 WP_164796246.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  G5C61_RS06940 comJ 1238718..1239125 (+) 408 WP_164796247.1 competence protein ComJ -
  G5C61_RS06945 helD 1239156..1241474 (-) 2319 WP_164796248.1 RNA polymerase recycling motor HelD -
  G5C61_RS28430 - 1241718..1241843 (-) 126 WP_264467362.1 hypothetical protein -
  G5C61_RS06950 - 1241983..1242501 (-) 519 WP_241262607.1 enoyl-CoA hydratase/isomerase family protein -
  G5C61_RS06955 - 1242741..1243109 (+) 369 WP_164796249.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16023.80 Da        Isoelectric Point: 4.2934

>NTDB_id=425929 G5C61_RS06935 WP_164796246.1 1238242..1238682(+) (nucA/comI) [Priestia megaterium strain S188]
MATYGEKLMASLFIIMACILGFTGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEAN
REESLKGYPTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFVVQ

Nucleotide


Download         Length: 441 bp        

>NTDB_id=425929 G5C61_RS06935 WP_164796246.1 1238242..1238682(+) (nucA/comI) [Priestia megaterium strain S188]
ATGGCTACATACGGGGAAAAATTAATGGCAAGTCTATTCATTATCATGGCATGTATTTTAGGGTTTACGGGACATGCGGC
TTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAACTATGATGCGACACTTTATTTTCCGTTAGACCGATATCCTGAAA
CGGGTGATCATATTCGTGACGCAATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACGGTGCTGAAGCGAAC
CGGGAAGAATCCCTGAAAGGATATCCGACAAAAACAGGTTATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGG
CGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAAC
AGTATCCAGATGGTACACGCGTACAATTTGTCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

81.507

0.548