Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   G5C61_RS04120 Genome accession   NZ_CP049296
Coordinates   761401..761823 (+) Length   140 a.a.
NCBI ID   WP_116514173.1    Uniprot ID   -
Organism   Priestia megaterium strain S188     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 756401..766823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C61_RS04095 - 756745..757578 (-) 834 WP_164795780.1 AraC family transcriptional regulator -
  G5C61_RS04100 - 757789..758610 (+) 822 WP_164795781.1 histidine kinase -
  G5C61_RS04105 - 758611..759252 (+) 642 WP_014459245.1 response regulator transcription factor -
  G5C61_RS04110 - 759384..760766 (+) 1383 WP_164795782.1 PepSY domain-containing protein -
  G5C61_RS04115 - 760796..761260 (+) 465 WP_164795783.1 FixH family protein -
  G5C61_RS04120 nucA/comI 761401..761823 (+) 423 WP_116514173.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  G5C61_RS04125 - 761977..762330 (+) 354 WP_223272376.1 DUF1516 family protein -
  G5C61_RS04130 - 762371..762961 (-) 591 WP_057244354.1 hypothetical protein -
  G5C61_RS04135 - 763249..763734 (-) 486 WP_164795784.1 hypothetical protein -
  G5C61_RS04140 fsa 763813..764481 (-) 669 WP_014459236.1 fructose-6-phosphate aldolase -
  G5C61_RS04145 gnd 764531..765424 (-) 894 WP_164795785.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15319.14 Da        Isoelectric Point: 4.4990

>NTDB_id=425925 G5C61_RS04120 WP_116514173.1 761401..761823(+) (nucA/comI) [Priestia megaterium strain S188]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFSDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=425925 G5C61_RS04120 WP_116514173.1 761401..761823(+) (nucA/comI) [Priestia megaterium strain S188]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTGATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCCGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGAGCGGGGTCTTGGATCTCCCATCAAGTAGACGAGTTTTCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.345

82.857

0.5