Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G5S54_RS13750 Genome accession   NZ_CP049285
Coordinates   2680556..2681185 (+) Length   209 a.a.
NCBI ID   WP_000839131.1    Uniprot ID   -
Organism   Shigella boydii strain 602068     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2660202..2685943 2680556..2681185 within 0


Gene organization within MGE regions


Location: 2660202..2685943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S54_RS24645 - 2660862..2660972 (-) 111 Protein_2718 hypothetical protein -
  G5S54_RS13665 (G5S54_13670) - 2661265..2662520 (-) 1256 Protein_2719 YccE family protein -
  G5S54_RS13670 (G5S54_13675) - 2662595..2663292 (+) 698 WP_226342166.1 IS1 family transposase -
  G5S54_RS13675 (G5S54_13680) - 2663338..2664075 (+) 738 WP_162761947.1 fimbrial chaperone -
  G5S54_RS13680 (G5S54_13685) pyrD 2664186..2665196 (+) 1011 WP_001295352.1 quinone-dependent dihydroorotate dehydrogenase -
  G5S54_RS13685 (G5S54_13690) zapC 2665370..2665912 (+) 543 WP_004985081.1 cell division protein ZapC -
  G5S54_RS13690 (G5S54_13695) ycbX 2665909..2667018 (-) 1110 WP_000224267.1 6-N-hydroxylaminopurine resistance protein YcbX -
  G5S54_RS13695 (G5S54_13700) rlmKL 2667262..2669370 (+) 2109 WP_039061596.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  G5S54_RS13700 (G5S54_13705) - 2669382..2671289 (+) 1908 WP_000053096.1 ABC transporter ATP-binding protein -
  G5S54_RS13705 (G5S54_13710) pqiA 2671419..2672672 (+) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  G5S54_RS13710 (G5S54_13715) pqiB 2672677..2674317 (+) 1641 WP_000445545.1 intermembrane transport protein PqiB -
  G5S54_RS13715 (G5S54_13720) pqiC 2674314..2674877 (+) 564 WP_000759124.1 membrane integrity-associated transporter subunit PqiC -
  G5S54_RS13720 (G5S54_13725) rmf 2675133..2675300 (+) 168 WP_000828648.1 ribosome modulation factor -
  G5S54_RS13725 (G5S54_13730) fabA 2675370..2675888 (-) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  G5S54_RS13730 (G5S54_13735) - 2675957..2677717 (-) 1761 WP_000156488.1 Lon protease family protein -
  G5S54_RS13735 (G5S54_13740) matP 2677903..2678355 (+) 453 WP_000877160.1 macrodomain Ter protein MatP -
  G5S54_RS13740 (G5S54_13745) ompA 2678431..2679471 (-) 1041 WP_000750416.1 porin OmpA -
  G5S54_RS13745 (G5S54_13750) sulA 2679828..2680337 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G5S54_RS13750 (G5S54_13755) sxy/tfoX 2680556..2681185 (+) 630 WP_000839131.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G5S54_RS13755 (G5S54_13760) yccS 2681148..2683310 (-) 2163 WP_000875021.1 YccS family putative transporter -
  G5S54_RS13760 (G5S54_13765) - 2683320..2683766 (-) 447 WP_001261235.1 YccF domain-containing protein -
  G5S54_RS13765 (G5S54_13770) helD 2683889..2685943 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.10 Da        Isoelectric Point: 9.2180

>NTDB_id=425874 G5S54_RS13750 WP_000839131.1 2680556..2681185(+) (sxy/tfoX) [Shigella boydii strain 602068]
MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=425874 G5S54_RS13750 WP_000839131.1 2680556..2681185(+) (sxy/tfoX) [Shigella boydii strain 602068]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAATGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTTAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995