Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GYO_RS33310 Genome accession   NC_016047
Coordinates   2307349..2307969 (+) Length   206 a.a.
NCBI ID   WP_014114180.1    Uniprot ID   G4NSU7
Organism   Bacillus spizizenii TU-B-10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302349..2312969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS33270 (GYO_2449) - 2303489..2303995 (-) 507 WP_014114176.1 PTS glucose transporter subunit IIA -
  GYO_RS33275 (GYO_2450) - 2304133..2304552 (+) 420 WP_013308008.1 Hsp20/alpha crystallin family protein -
  GYO_RS33280 (GYO_2451) - 2304573..2304941 (-) 369 WP_014114177.1 YppG family protein -
  GYO_RS33285 (GYO_2452) - 2305128..2305316 (+) 189 WP_003225611.1 YppF family protein -
  GYO_RS33290 (GYO_2453) - 2305356..2305727 (-) 372 WP_003225610.1 YppE family protein -
  GYO_RS33295 (GYO_2454) - 2305773..2306018 (-) 246 WP_014114178.1 DUF5446 family protein -
  GYO_RS33300 (GYO_2455) sspM 2306217..2306321 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GYO_RS33305 (GYO_2456) - 2306346..2307308 (-) 963 WP_014114179.1 DUF2515 domain-containing protein -
  GYO_RS33310 (GYO_2457) recU 2307349..2307969 (+) 621 WP_014114180.1 Holliday junction resolvase RecU Machinery gene
  GYO_RS33315 (GYO_2458) - 2307991..2310732 (+) 2742 WP_014114181.1 transglycosylase domain-containing protein -
  GYO_RS33320 (GYO_2459) - 2310806..2311300 (-) 495 WP_014114182.1 YpoC family protein -
  GYO_RS33325 (GYO_2460) nth 2311297..2311956 (-) 660 WP_003225594.1 endonuclease III -
  GYO_RS33330 (GYO_2461) dnaD 2311975..2312673 (-) 699 WP_003225592.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6510

>NTDB_id=42585 GYO_RS33310 WP_014114180.1 2307349..2307969(+) (recU) [Bacillus spizizenii TU-B-10]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFFFWDRKE
KNGRKSIRKDELEESAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=42585 GYO_RS33310 WP_014114180.1 2307349..2307969(+) (recU) [Bacillus spizizenii TU-B-10]
GTGATTCGTTATCCTAACGGAAAAACGTTCCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGGATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTCA
TACACAAAAAGCCGACACCAGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTTTTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAATCAGCATATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCTTCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

98.544

100

0.985

Multiple sequence alignment