Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G5S55_RS01015 Genome accession   NZ_CP049281
Coordinates   210605..211120 (+) Length   171 a.a.
NCBI ID   WP_000168307.1    Uniprot ID   -
Organism   Shigella boydii strain 600657     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 205605..216120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S55_RS00995 (G5S55_00995) aphA 205894..206607 (+) 714 WP_001317548.1 acid phosphatase AphA -
  G5S55_RS01000 (G5S55_01000) - 206718..207134 (+) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  G5S55_RS01005 (G5S55_01005) - 207138..207494 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  G5S55_RS01010 (G5S55_01010) uvrA 207529..210351 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  G5S55_RS01015 (G5S55_01015) ssb 210605..211120 (+) 516 WP_000168307.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G5S55_RS01020 (G5S55_01020) - 211219..211500 (-) 282 WP_001295689.1 YjcB family protein -
  G5S55_RS01025 (G5S55_01025) - 211930..212670 (+) 741 WP_000019553.1 CSS-motif domain-containing protein -
  G5S55_RS01030 (G5S55_01030) - 212721..213419 (+) 699 Protein_196 IS1 family transposase -
  G5S55_RS01035 (G5S55_01035) pdeC 213431..214294 (+) 864 Protein_197 c-di-GMP phosphodiesterase PdeC -
  G5S55_RS01040 (G5S55_01040) soxS 214297..214620 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  G5S55_RS01045 (G5S55_01045) soxR 214706..215170 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18264.25 Da        Isoelectric Point: 5.2358

>NTDB_id=425846 G5S55_RS01015 WP_000168307.1 210605..211120(+) (ssb) [Shigella boydii strain 600657]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=425846 G5S55_RS01015 WP_000168307.1 210605..211120(+) (ssb) [Shigella boydii strain 600657]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCTCAGC
AGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAG
CCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.481

100

0.778
  ssb Glaesserella parasuis strain SC1401

58.242

100

0.62
  ssb Neisseria meningitidis MC58

48.588

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.374