Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G5S56_RS09085 Genome accession   NZ_CP049278
Coordinates   1897206..1897835 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella boydii strain 600690     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1892206..1902835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S56_RS09065 (G5S56_09065) - 1892592..1894352 (-) 1761 WP_000156493.1 Lon protease family protein -
  G5S56_RS09070 (G5S56_09070) matP 1894538..1894990 (+) 453 WP_000877156.1 macrodomain Ter protein MatP -
  G5S56_RS09075 (G5S56_09075) ompA 1895066..1896121 (-) 1056 WP_004991512.1 porin OmpA -
  G5S56_RS09080 (G5S56_09080) sulA 1896478..1896987 (-) 510 WP_078166432.1 SOS-induced cell division inhibitor SulA -
  G5S56_RS09085 (G5S56_09085) sxy/tfoX 1897206..1897835 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G5S56_RS09090 (G5S56_09090) yccS 1897798..1899960 (-) 2163 WP_134795673.1 YccS family putative transporter -
  G5S56_RS09095 (G5S56_09095) - 1899970..1900416 (-) 447 WP_001261235.1 YccF domain-containing protein -
  G5S56_RS09100 (G5S56_09100) helD 1900539..1902593 (+) 2055 WP_004978416.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=425832 G5S56_RS09085 WP_000839153.1 1897206..1897835(+) (sxy/tfoX) [Shigella boydii strain 600690]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=425832 G5S56_RS09085 WP_000839153.1 1897206..1897835(+) (sxy/tfoX) [Shigella boydii strain 600690]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTTAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1