Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G5S56_RS02545 Genome accession   NZ_CP049278
Coordinates   533833..534369 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella boydii strain 600690     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 528833..539369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S56_RS02525 (G5S56_02525) aphA 529123..529836 (+) 714 WP_001226928.1 acid phosphatase AphA -
  G5S56_RS02530 (G5S56_02530) - 529947..530363 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  G5S56_RS02535 (G5S56_02535) - 530367..530723 (+) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  G5S56_RS02540 (G5S56_02540) uvrA 530758..533580 (-) 2823 WP_078167160.1 excinuclease ABC subunit UvrA -
  G5S56_RS02545 (G5S56_02545) ssb 533833..534369 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G5S56_RS02550 (G5S56_02550) - 534468..534749 (-) 282 WP_001295689.1 YjcB family protein -
  G5S56_RS02555 (G5S56_02555) pdeC 535179..536765 (+) 1587 WP_078167161.1 c-di-GMP phosphodiesterase PdeC -
  G5S56_RS02560 (G5S56_02560) soxS 536768..537091 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  G5S56_RS02565 (G5S56_02565) soxR 537177..537641 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=425829 G5S56_RS02545 WP_000168305.1 533833..534369(+) (ssb) [Shigella boydii strain 600690]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=425829 G5S56_RS02545 WP_000168305.1 533833..534369(+) (ssb) [Shigella boydii strain 600690]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489