Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CVT06_RS02260 Genome accession   NZ_CP049274
Coordinates   461694..462638 (+) Length   314 a.a.
NCBI ID   WP_107792734.1    Uniprot ID   A0A7S9NDW4
Organism   Campylobacter concisus strain P10CDO-S2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 456694..467638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT06_RS02245 (CVT06_02245) - 457422..457820 (+) 399 WP_230862250.1 DUF2809 domain-containing protein -
  CVT06_RS02250 (CVT06_02250) polA 457898..460534 (-) 2637 WP_107792736.1 DNA polymerase I -
  CVT06_RS02255 (CVT06_02255) - 460654..461697 (+) 1044 WP_107792735.1 glycosyltransferase family 4 protein -
  CVT06_RS02260 (CVT06_02260) waaF 461694..462638 (+) 945 WP_107792734.1 lipopolysaccharide heptosyltransferase II Regulator
  CVT06_RS02265 (CVT06_02265) exbB 462773..463201 (+) 429 WP_084041708.1 TonB-system energizer ExbB -
  CVT06_RS02270 (CVT06_02270) exbD 463188..463571 (+) 384 WP_107792733.1 TonB system transport protein ExbD -
  CVT06_RS02275 (CVT06_02275) - 463546..464322 (+) 777 WP_087584630.1 energy transducer TonB -
  CVT06_RS02285 (CVT06_02285) - 464906..466573 (+) 1668 WP_107792732.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35738.11 Da        Isoelectric Point: 9.6778

>NTDB_id=425815 CVT06_RS02260 WP_107792734.1 461694..462638(+) (waaF) [Campylobacter concisus strain P10CDO-S2]
MRVFIELPTWLGDAVMASAAIENLSKNAKNIVFFGSYVACELYKSHPKCEKVVIDDSKKQNSRYLSLIKTARKLGKFDIA
ISFRSSFASKFLLFFLKATQKFCFKKSSESLHQVQKYLNFIKQSLNLKEISNELKIYYEAKKSEQKLLVLNPGASYGSAK
RWYPHYFAEVALHFKDEFDVKITGSKAELEICNEIEQMLLKNGMKCENLAGKTSIKELCEVIGSIKNGIFLTNDSGPMHI
AAAYKVPLVALFGPTKFKETSPWQDESAKIVHLNLECMPCMKRVCPIKTHACMKELTPKMVIAEIELLRKKLNF

Nucleotide


Download         Length: 945 bp        

>NTDB_id=425815 CVT06_RS02260 WP_107792734.1 461694..462638(+) (waaF) [Campylobacter concisus strain P10CDO-S2]
GTGAGAGTGTTTATAGAGCTTCCAACTTGGCTTGGTGATGCTGTGATGGCGAGTGCGGCGATAGAAAATTTAAGTAAAAA
TGCTAAAAATATCGTATTTTTTGGCTCTTATGTGGCCTGTGAGCTTTATAAATCACATCCAAAGTGCGAAAAAGTAGTCA
TTGACGATAGTAAAAAGCAAAACTCAAGATATTTAAGCCTTATAAAAACGGCTAGAAAGCTTGGAAAATTTGATATCGCT
ATTAGTTTTAGAAGCTCATTTGCTAGTAAATTTTTGCTATTTTTTCTAAAAGCAACACAAAAATTTTGCTTTAAAAAGAG
TAGCGAGAGCTTGCATCAGGTGCAAAAATATCTAAATTTCATAAAGCAAAGCCTAAATTTAAAAGAAATTTCAAATGAAC
TAAAAATTTATTATGAAGCCAAAAAAAGTGAGCAAAAACTCCTCGTGCTAAATCCGGGTGCTAGCTACGGAAGTGCCAAA
AGGTGGTATCCGCACTATTTTGCAGAGGTTGCACTGCACTTTAAAGATGAATTTGATGTAAAGATCACTGGCTCAAAAGC
TGAGCTTGAGATCTGCAATGAGATCGAGCAAATGCTCTTAAAAAATGGTATGAAATGTGAAAATTTAGCTGGAAAAACAA
GCATAAAAGAGCTTTGTGAGGTCATAGGTTCTATAAAAAATGGCATTTTTTTGACAAACGATAGTGGTCCTATGCATATT
GCAGCTGCCTATAAAGTGCCACTTGTGGCTCTTTTTGGACCGACTAAATTTAAAGAGACTAGCCCATGGCAAGATGAGAG
TGCAAAGATAGTGCATTTAAATTTAGAGTGTATGCCATGTATGAAGCGAGTATGTCCTATAAAGACACATGCCTGTATGA
AGGAGCTTACGCCAAAAATGGTTATTGCTGAAATAGAGCTGCTAAGAAAAAAATTAAATTTTTGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(75-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9NDW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.352

100

0.484