Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GYO_RS31010 Genome accession   NC_016047
Coordinates   1786165..1787058 (+) Length   297 a.a.
NCBI ID   WP_041520950.1    Uniprot ID   A0A9Q4HLA1
Organism   Bacillus spizizenii TU-B-10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1781165..1792058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS30990 - 1781837..1783564 (+) 1728 WP_041520949.1 hypothetical protein -
  GYO_RS30995 (GYO_1960) - 1783561..1783842 (+) 282 WP_014113777.1 FlhB-like flagellar biosynthesis protein -
  GYO_RS31000 (GYO_1961) sucC 1784016..1785173 (+) 1158 WP_014113778.1 ADP-forming succinate--CoA ligase subunit beta -
  GYO_RS31005 (GYO_1962) sucD 1785202..1786104 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  GYO_RS31010 (GYO_1964) dprA 1786165..1787058 (+) 894 WP_041520950.1 DNA-processing protein DprA Machinery gene
  GYO_RS31015 (GYO_1966) topA 1787245..1789320 (+) 2076 WP_014113782.1 type I DNA topoisomerase -
  GYO_RS31020 (GYO_1967) trmFO 1789396..1790703 (+) 1308 WP_014113783.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GYO_RS31025 (GYO_1968) xerC 1790771..1791685 (+) 915 WP_014113784.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32939.36 Da        Isoelectric Point: 9.9037

>NTDB_id=42581 GYO_RS31010 WP_041520950.1 1786165..1787058(+) (dprA) [Bacillus spizizenii TU-B-10]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVLETVTRGKIKAAALKNKIEEQYPKLQRVLAAYHEQGINPIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQIVNHLTKELCRKNWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=42581 GYO_RS31010 WP_041520950.1 1786165..1787058(+) (dprA) [Bacillus spizizenii TU-B-10]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACGTCACCCGTGTTAGAAACTGTTACTCGAGGTAAAATAAAGGCAGCTGCATTAAAAA
ATAAAATAGAAGAACAATATCCAAAGCTTCAGCGTGTACTTGCTGCTTACCATGAGCAAGGAATTAACCCCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCTGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGATACAAATTGTCAATCATCTTA
CAAAAGAGCTCTGCCGTAAAAATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCAGGCGGATTTCAACACATATATCCCCGGGAAAACCTTCAGTTAGC
AGATCATATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGATTAAGTGAAGGCGTTATTGTCGTGCAGGGCAAAGAAAAAAGTGGTTCGCTGATTACTGCA
TATCAAGCACTGGAACAAGGAAGAGAAGTATTTGCCGTACCCGGCTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCTATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

94.613

100

0.946

Multiple sequence alignment