Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CVT17_RS02190 Genome accession   NZ_CP049272
Coordinates   453753..454697 (+) Length   314 a.a.
NCBI ID   WP_107769722.1    Uniprot ID   A0AAE7TNK8
Organism   Campylobacter concisus strain P27CDO-S2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 448753..459697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT17_RS02175 (CVT17_02180) - 449482..449880 (+) 399 WP_230853309.1 DUF2809 domain-containing protein -
  CVT17_RS02180 (CVT17_02185) polA 449957..452593 (-) 2637 WP_107769724.1 DNA polymerase I -
  CVT17_RS02185 (CVT17_02190) - 452713..453756 (+) 1044 WP_107858586.1 glycosyltransferase family 4 protein -
  CVT17_RS02190 (CVT17_02195) waaF 453753..454697 (+) 945 WP_107769722.1 lipopolysaccharide heptosyltransferase II Regulator
  CVT17_RS02195 (CVT17_02200) exbB 454833..455261 (+) 429 WP_107769721.1 TonB-system energizer ExbB -
  CVT17_RS02200 (CVT17_02205) exbD 455248..455631 (+) 384 WP_107769720.1 TonB system transport protein ExbD -
  CVT17_RS02205 (CVT17_02210) - 455606..456394 (+) 789 WP_107769719.1 energy transducer TonB -
  CVT17_RS02215 (CVT17_02220) - 456968..458635 (+) 1668 WP_072593834.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35687.97 Da        Isoelectric Point: 9.5967

>NTDB_id=425804 CVT17_RS02190 WP_107769722.1 453753..454697(+) (waaF) [Campylobacter concisus strain P27CDO-S2]
MRVFIELPTWLGDAVMASAAIENLSKNAKNIVFFGSYVACELYKSHPKCEKVVIDDSKKQNSRYLSLIKTARKLGKFDIA
ISFRSSFASKFLLFFLKATQKFCFKKSSESLHQVQKYLNFIKQSLNLKEISNELKIYYEAKKSKQKLLVLNPGASYGSAK
RWYPHYFAEVALHFKDEFDVKITGSKAELEICNEIEQTLLQNGMKCENLAGKTSIKELCEVIGSIKNGIFLTNDSGPMHI
AAAYKVPLVALFGPTKFKETSPWQDEGAKIVHLNLECMPCMKRVCPIKTHACMKELVPEIVITEIELLRKKLNF

Nucleotide


Download         Length: 945 bp        

>NTDB_id=425804 CVT17_RS02190 WP_107769722.1 453753..454697(+) (waaF) [Campylobacter concisus strain P27CDO-S2]
GTGAGAGTTTTTATAGAGCTTCCAACTTGGCTTGGAGATGCTGTGATGGCGAGCGCAGCGATAGAAAATTTAAGTAAAAA
TGCTAAAAATATTGTATTTTTTGGCTCTTACGTGGCCTGTGAGCTTTATAAATCACATCCAAAGTGCGAAAAAGTAGTCA
TTGACGATAGTAAAAAACAAAACTCAAGATATTTAAGCCTTATAAAAACGGCTAGAAAGCTTGGAAAATTTGATATTGCT
ATTAGTTTTAGAAGCTCATTTGCTAGTAAATTTTTGCTATTTTTTCTAAAAGCAACGCAAAAATTTTGCTTTAAAAAGAG
TAGCGAGAGCTTGCATCAGGTGCAAAAATATCTAAATTTTATAAAGCAAAGCCTGAATTTAAAAGAAATTTCAAACGAAC
TAAAAATTTATTATGAAGCCAAAAAAAGTAAGCAAAAGCTCCTCGTGCTAAATCCAGGTGCTAGCTACGGAAGTGCCAAA
AGGTGGTATCCGCACTATTTTGCAGAGGTTGCATTGCACTTTAAAGATGAATTTGATGTAAAGATCACTGGCTCAAAAGC
CGAGCTTGAGATTTGCAATGAAATCGAGCAAACGCTCTTGCAAAATGGTATGAAATGTGAAAATTTAGCCGGAAAAACGA
GCATAAAAGAGCTTTGCGAAGTTATAGGTTCTATAAAAAATGGCATCTTTTTGACAAATGATAGTGGCCCTATGCATATC
GCAGCTGCCTATAAAGTGCCACTTGTGGCTCTTTTTGGACCGACAAAATTTAAAGAGACCAGCCCTTGGCAAGACGAAGG
TGCAAAGATAGTGCACTTAAATTTAGAGTGTATGCCATGCATGAAGCGAGTATGTCCTATAAAAACACATGCCTGTATGA
AGGAGCTTGTGCCAGAAATAGTCATCACTGAAATAGAGCTACTAAGAAAAAAATTAAATTTTTGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(75-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.664

100

0.487