Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GYO_RS30170 Genome accession   NC_016047
Coordinates   1621249..1621527 (+) Length   92 a.a.
NCBI ID   WP_041520942.1    Uniprot ID   A0A9Q4E6G3
Organism   Bacillus spizizenii TU-B-10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1616249..1626527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS30150 (GYO_1780) - 1617435..1618346 (+) 912 WP_014113646.1 ketopantoate reductase family protein -
  GYO_RS30155 (GYO_1781) - 1618378..1619610 (-) 1233 WP_014113647.1 aminopeptidase -
  GYO_RS30160 (GYO_1782) - 1619722..1619856 (-) 135 WP_003238865.1 protein YkpC -
  GYO_RS30165 (GYO_1783) mreBH 1619958..1620965 (-) 1008 WP_014113648.1 cell shape-determining protein MreBH -
  GYO_RS30170 (GYO_1784) abrB 1621249..1621527 (+) 279 WP_041520942.1 transcriptional regulator AbhA Regulator
  GYO_RS30175 (GYO_1785) kinC 1621717..1623003 (+) 1287 WP_014113650.1 two-component sensor histidine kinase KinC -
  GYO_RS30180 (GYO_1786) - 1623020..1623847 (+) 828 WP_014113651.1 gamma-glutamylcyclotransferase -
  GYO_RS30185 (GYO_1787) ktrC 1623919..1624584 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  GYO_RS30190 (GYO_1788) ade 1624740..1626473 (+) 1734 WP_014113652.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10270.09 Da        Isoelectric Point: 5.8872

>NTDB_id=42580 GYO_RS30170 WP_041520942.1 1621249..1621527(+) (abrB) [Bacillus spizizenii TU-B-10]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGEKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=42580 GYO_RS30170 WP_041520942.1 1621249..1621527(+) (abrB) [Bacillus spizizenii TU-B-10]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGGCGTATTGTCATGCCGATAGAATTAAGACGGGCACTTGA
TATTGCTATAAAAGACAGTATTGAGTTTTTTGTTGACGGAGAAAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTCT
GTTTAATGACCGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGTCCTGAAGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587

Multiple sequence alignment