Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CVT01_RS02335 Genome accession   NZ_CP049266
Coordinates   478639..479592 (-) Length   317 a.a.
NCBI ID   WP_107714554.1    Uniprot ID   A0A7S9RGJ1
Organism   Campylobacter concisus strain P1CDO3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 473639..484592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT01_RS02310 (CVT01_02310) - 475671..476378 (+) 708 WP_107714551.1 DUF6882 domain-containing protein -
  CVT01_RS02315 (CVT01_02315) - 476364..477257 (-) 894 WP_107714552.1 glutamate--tRNA ligase family protein -
  CVT01_RS02320 (CVT01_02320) - 477235..477480 (-) 246 WP_103652043.1 RNA-binding protein -
  CVT01_RS02325 (CVT01_02325) - 477705..478256 (-) 552 WP_107714553.1 DJ-1 family glyoxalase III -
  CVT01_RS02330 (CVT01_02330) - 478338..478595 (+) 258 WP_258031662.1 SelT/SelW/SelH family (seleno)protein -
  CVT01_RS02335 (CVT01_02335) waaF 478639..479592 (-) 954 WP_107714554.1 lipopolysaccharide heptosyltransferase II Regulator
  CVT01_RS02340 (CVT01_02340) - 479589..480620 (-) 1032 WP_107714555.1 glycosyltransferase family 4 protein -
  CVT01_RS02345 (CVT01_02345) - 480592..481509 (-) 918 WP_230863639.1 O-antigen ligase family protein -
  CVT01_RS02350 (CVT01_02350) - 481902..482951 (+) 1050 WP_196377381.1 glycosyltransferase -
  CVT01_RS02355 (CVT01_02355) - 482948..483718 (+) 771 WP_107714963.1 polysaccharide deacetylase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35485.60 Da        Isoelectric Point: 9.5345

>NTDB_id=425781 CVT01_RS02335 WP_107714554.1 478639..479592(-) (waaF) [Campylobacter concisus strain P1CDO3]
MRVFIELPTWLGDSVMASAAIENLVQNEKNLQIVFFGSFVACELYKNHPNCEKVVVDESKKAKFRFLSLAKSAKSLGKFD
LALSFRSSFASKFMLFFINAKQKAIFRKSKTVLHQVLKYAIFVKNALNLGEISTQIKLHFTPQISAKKTLALNPGASYGS
AKRWYPEYFAQVALNFKDEFGIVIFGGKGEQEICEKIEQILKENGVACQNLADKTSVKELCERIAGLSQNGIFVTNDSGP
MHIAAAFHVPTIALFGPTKFSETSPWGNEFAKIVHLNLECMPCMKRVCPLKTHACMKELKPQMVIDEINLLRKESGI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=425781 CVT01_RS02335 WP_107714554.1 478639..479592(-) (waaF) [Campylobacter concisus strain P1CDO3]
ATGAGAGTTTTTATCGAGCTTCCAACCTGGCTTGGCGATAGCGTAATGGCAAGCGCTGCGATAGAAAATTTAGTGCAAAA
TGAGAAAAATTTACAAATCGTTTTTTTTGGCTCATTTGTAGCTTGCGAGCTTTACAAAAACCATCCAAACTGCGAAAAAG
TAGTCGTTGATGAGAGCAAAAAGGCAAAATTTAGGTTTTTATCTCTTGCAAAAAGTGCAAAAAGTCTTGGCAAATTTGAT
CTAGCGCTTAGCTTTAGAAGCTCGTTTGCTAGCAAATTTATGCTATTTTTTATAAACGCTAAGCAAAAGGCTATCTTTAG
AAAGAGCAAAACCGTCCTTCATCAGGTGCTAAAATATGCAATTTTTGTAAAAAATGCCCTTAATTTGGGTGAAATTTCCA
CTCAGATAAAGCTACATTTTACACCTCAAATTTCAGCCAAAAAAACACTAGCTCTAAATCCAGGTGCGAGCTATGGAAGT
GCGAAAAGATGGTATCCAGAATATTTTGCGCAGGTGGCACTAAATTTCAAAGATGAGTTTGGGATCGTCATCTTTGGTGG
CAAAGGCGAGCAAGAAATTTGTGAAAAAATTGAGCAAATTTTAAAAGAAAATGGCGTAGCTTGCCAAAATTTAGCTGACA
AAACAAGCGTCAAGGAGCTTTGCGAGCGCATAGCTGGGCTTAGCCAAAATGGCATTTTCGTCACAAACGATAGTGGCCCT
ATGCACATAGCTGCCGCCTTTCATGTGCCAACAATCGCTCTTTTTGGACCGACAAAATTTAGTGAAACCTCGCCATGGGG
CAATGAATTTGCAAAAATAGTACATCTAAACTTAGAGTGCATGCCCTGTATGAAGCGAGTTTGCCCGCTAAAAACGCATG
CTTGCATGAAAGAGCTAAAGCCACAAATGGTGATAGATGAGATAAATTTACTAAGAAAAGAGAGTGGGATTTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(105-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9RGJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.541

100

0.511