Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GYO_RS29940 Genome accession   NC_016047
Coordinates   1581302..1581766 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus spizizenii TU-B-10     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576302..1586766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS29920 (GYO_1733) kinA 1576769..1578589 (+) 1821 WP_014113611.1 sporulation histidine kinase KinA -
  GYO_RS29925 (GYO_1734) - 1578599..1579780 (-) 1182 WP_003218653.1 aminotransferase A -
  GYO_RS29930 (GYO_1735) - 1579982..1580143 (-) 162 WP_003218655.1 hypothetical protein -
  GYO_RS29935 (GYO_1737) cheV 1580349..1581260 (+) 912 WP_014113613.1 chemotaxis protein CheV -
  GYO_RS29940 (GYO_1738) kre 1581302..1581766 (-) 465 WP_003232406.1 YkyB family protein Regulator
  GYO_RS29945 (GYO_1739) - 1581892..1583184 (-) 1293 WP_014113614.1 MFS transporter -
  GYO_RS29950 (GYO_1740) - 1583260..1583754 (-) 495 WP_072182876.1 L,D-transpeptidase family protein -
  GYO_RS29955 (GYO_1741) - 1583811..1584671 (-) 861 WP_014113616.1 metallophosphoesterase -
  GYO_RS29960 (GYO_1742) fadH 1584813..1585577 (+) 765 WP_014113617.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=42578 GYO_RS29940 WP_003232406.1 1581302..1581766(-) (kre) [Bacillus spizizenii TU-B-10]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=42578 GYO_RS29940 WP_003232406.1 1581302..1581766(-) (kre) [Bacillus spizizenii TU-B-10]
ATGGACGACCATGCATATACGAAAGATCTGCAACCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATACCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAACCCAAGGTTTAGCCAACAGCAATCGGACGTGCTTATTTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTGTTGCAAGAATATGTCGGCATGAAAGAAAAACCGCTTGTGC
CAAATCGCCAGCAGCCAGCTTATCATAAACCTGTTTTTAAAAAGCTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment