Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CVT07_RS07075 Genome accession   NZ_CP049264
Coordinates   1416822..1417775 (+) Length   317 a.a.
NCBI ID   WP_107936381.1    Uniprot ID   -
Organism   Campylobacter concisus strain P11CDO-S1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1411822..1422775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT07_RS07055 (CVT07_07055) - 1412430..1413467 (-) 1038 WP_107936374.1 glycosyltransferase -
  CVT07_RS07060 (CVT07_07060) - 1413445..1414764 (-) 1320 WP_107936376.1 O-antigen ligase family protein -
  CVT07_RS07065 (CVT07_07065) - 1414727..1415662 (-) 936 WP_107936378.1 glycosyltransferase family 9 protein -
  CVT07_RS07070 (CVT07_07070) - 1415794..1416825 (+) 1032 WP_107936380.1 glycosyltransferase family 4 protein -
  CVT07_RS07075 (CVT07_07075) waaF 1416822..1417775 (+) 954 WP_107936381.1 lipopolysaccharide heptosyltransferase II Regulator
  CVT07_RS07080 (CVT07_07080) - 1417810..1418517 (-) 708 WP_107936383.1 DUF6882 domain-containing protein -
  CVT07_RS07085 (CVT07_07085) dnaE 1418533..1422144 (-) 3612 WP_107936385.1 DNA polymerase III subunit alpha -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35422.56 Da        Isoelectric Point: 9.7836

>NTDB_id=425774 CVT07_RS07075 WP_107936381.1 1416822..1417775(+) (waaF) [Campylobacter concisus strain P11CDO-S1]
MRVFIELPTWLGDSVMASAAIENLVQNEKNLQIVFFGSFVACELYKSHPNCEKVVVDESKKAKFRFLSLAKSAKSLGKFD
LALSFRSSFASKFLLFFINAKKKAIFKKSKTVLHQVLKYANFVKNALGLSEISTKLKLHFTPQISAKKTLALNPGASYGS
AKRWYPEYFAQVALNYKDEFEIVIFGGKGEQEICEKIEQILKENGATCQNLAGKTSVKELCERIAGLSQNGIFVTNDSGP
MHVAAAFHVPTIALFGPTKFSETSPWGNEFAKILHLNLACMPCMKRVCPLKTHACMKDLKPQMVIDEINLLRKELGY

Nucleotide


Download         Length: 954 bp        

>NTDB_id=425774 CVT07_RS07075 WP_107936381.1 1416822..1417775(+) (waaF) [Campylobacter concisus strain P11CDO-S1]
ATGAGAGTTTTTATCGAGCTTCCAACCTGGCTTGGTGATAGCGTGATGGCAAGCGCTGCGATCGAAAATTTAGTGCAAAA
CGAAAAGAATTTACAAATCGTTTTTTTTGGCTCATTTGTAGCCTGCGAGCTTTATAAAAGTCATCCAAACTGCGAAAAAG
TGGTCGTTGATGAGAGCAAAAAGGCTAAATTTAGATTTTTATCCCTTGCTAAAAGTGCAAAAAGTCTTGGTAAATTTGAT
CTAGCACTTAGCTTTAGAAGCTCGTTTGCTAGTAAATTTTTGCTATTTTTTATAAACGCTAAGAAAAAAGCCATCTTTAA
AAAGAGCAAAACCGTCCTTCATCAGGTGCTAAAATATGCAAATTTTGTAAAAAATGCCCTAGGCCTAAGCGAAATTTCTA
CTAAGCTAAAGCTACATTTTACACCTCAAATTTCAGCTAAAAAAACACTAGCTCTAAATCCAGGTGCGAGCTACGGAAGT
GCGAAAAGATGGTACCCAGAGTACTTTGCGCAGGTGGCTTTAAATTACAAAGATGAGTTTGAGATAGTCATTTTTGGTGG
CAAAGGCGAGCAAGAAATTTGCGAGAAAATAGAGCAAATTTTAAAAGAAAACGGCGCAACTTGCCAGAATTTAGCTGGCA
AAACCAGCGTCAAAGAGCTTTGTGAGCGCATAGCTGGGCTTAGTCAAAATGGCATTTTTGTCACAAACGATAGCGGCCCT
ATGCACGTAGCTGCCGCCTTTCATGTGCCAACGATCGCTCTTTTTGGACCGACAAAATTTAGTGAAACCTCGCCATGGGG
CAATGAATTTGCAAAGATATTGCATCTAAATTTAGCTTGCATGCCCTGTATGAAGCGAGTTTGCCCACTAAAAACGCATG
CTTGCATGAAAGATCTAAAGCCGCAAATGGTAATAGATGAGATAAATTTACTAAGAAAAGAGCTTGGTTATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(112-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.155

100

0.511