NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	G6N79_RS02940	Genome accession	NZ_CP049246
Coordinates	661888..663276 (-)	Length	462 a.a.
NCBI ID	WP_103906499.1	Uniprot ID	A0A1H5ZJV4
Organism	Sphingobacterium lactis strain DSM 22361
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 656888..668276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6N79_RS02915	-	657026..658567 (-)	1542	WP_103906494.1	NAD(P)/FAD-dependent oxidoreductase	-
G6N79_RS02920	-	658717..659295 (+)	579	WP_103906495.1	LemA family protein	-
G6N79_RS02925	-	659383..659817 (+)	435	WP_103906496.1	TPM domain-containing protein	-
G6N79_RS02930	-	659823..660650 (+)	828	WP_103906497.1	TPM domain-containing protein	-
G6N79_RS02935	-	660697..661836 (+)	1140	WP_103906498.1	TlpA disulfide reductase family protein	-
G6N79_RS02940	radA	661888..663276 (-)	1389	WP_103906499.1	DNA repair protein RadA	Machinery gene
G6N79_RS02945	-	663345..663851 (+)	507	WP_103906500.1	RNA polymerase sigma factor	-
G6N79_RS02950	-	663851..664495 (+)	645	WP_103906501.1	hypothetical protein	-
G6N79_RS02955	-	664568..664984 (-)	417	WP_103906502.1	DUF2147 domain-containing protein	-
G6N79_RS02960	-	665134..665481 (+)	348	WP_103906503.1	phage holin family protein	-
G6N79_RS02965	-	665633..666985 (-)	1353	WP_103906504.1	hypothetical protein	-

Sequence

Protein

Download Length: 462 a.a. Molecular weight: 50998.43 Da Isoelectric Point: 6.3740

                                >NTDB_id=425706 G6N79_RS02940 WP_103906499.1 661888..663276(-) (radA) [Sphingobacterium lactis strain DSM 22361]

MAKTKSAYFCQSCGYESPKWLGQCPSCKQWNTFVEEVVEKSSSRVPEWRSSTVANTGTKRTNKAAIIHEIVYSEEQRLEA

PDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPKVKTLYISGEESEQQIKMRAERLSQSSNANCFILTETSM

QNIFKQIDQVEPNVVVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT

VLQFEGDRNHVYRILRAVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEQVSGVAVAAMLEGMRPLMIEVQALVS

NSAYGTPQRSSTGFDTKRLNMLLAVLEKRFGFRMSAQDVFLNIAGGLRVEDPAVDLAVIASLISSQQDIPLPANITFAGE

VGLSGEIRAVNRIEQRIQEAEKLGFEQIFISKYNTKGLDVKRYQILVRPVATLEDVFRILFG

Nucleotide

Download Length: 1389 bp

                                >NTDB_id=425706 G6N79_RS02940 WP_103906499.1 661888..663276(-) (radA) [Sphingobacterium lactis strain DSM 22361]

ATGGCGAAGACAAAATCAGCATATTTCTGTCAATCATGTGGGTATGAATCCCCGAAATGGTTAGGGCAGTGTCCATCCTG

TAAGCAATGGAATACGTTTGTGGAAGAGGTGGTGGAGAAATCCTCCAGTAGGGTGCCGGAATGGCGGAGTTCCACTGTGG

CAAATACGGGGACGAAGCGTACCAACAAGGCAGCGATAATCCATGAGATTGTCTACTCCGAAGAACAGCGGCTAGAAGCT

CCAGATAAGGAGTTTAACCGTGTTCTAGGTGGGGGCATCGTGCCGGGCTCACTGGTACTGATCGGCGGCGAGCCGGGAAT

CGGCAAGTCAACCTTGATGTTGCAATTGGCCCTTTCCATTCCGAAAGTGAAGACGTTGTATATTTCAGGGGAGGAAAGCG

AGCAACAGATCAAGATGCGGGCGGAGCGATTGTCGCAGAGCTCCAATGCCAATTGCTTTATCCTCACGGAGACGAGTATG

CAGAACATCTTCAAACAGATCGATCAGGTAGAACCGAATGTGGTGGTCATCGACTCGATCCAGACGTTGCATTCTGCGCA

GATCGAATCGGCTCCGGGATCGGTGTCCCAAGTTCGGGAGTGTACCGCAGAGCTATTGCGATTTGCTAAAGAGACCAATA

CGCCTGTTTTCATCGTGGGCCATATTACGAAAGATGGTTCCATTGCAGGGCCAAAGGTGCTGGAGCACATGGTGGACACC

GTGCTGCAGTTTGAGGGCGATAGAAACCATGTCTATCGGATCTTGCGTGCCGTGAAGAATCGATTTGGATCTTCATCGGA

ATTGGGGATCTACGAGATGCAAGGGTCCGGTCTGCGGGAAGTTTCCAACCCTTCGGAGATTATGCTGTCGCAACGGGAGG

AACAGGTGAGTGGGGTAGCGGTAGCCGCCATGCTGGAAGGTATGCGCCCCTTGATGATTGAGGTACAGGCATTGGTTTCC

AACTCAGCCTATGGCACACCGCAGCGTAGCTCAACGGGGTTTGACACCAAGCGATTGAATATGTTATTGGCCGTGCTGGA

AAAAAGATTTGGCTTCCGCATGAGCGCACAGGATGTGTTCCTGAATATTGCCGGTGGCTTACGTGTTGAAGATCCTGCCG

TGGATCTTGCAGTCATTGCTTCGCTGATTTCATCGCAACAGGATATCCCCCTTCCAGCAAACATCACCTTTGCGGGTGAA

GTCGGCCTGTCGGGTGAGATTCGGGCAGTGAACCGTATTGAACAGCGCATTCAGGAAGCCGAAAAATTAGGCTTTGAACA

GATATTTATTTCCAAATACAATACCAAGGGGCTGGATGTCAAACGGTACCAGATTTTAGTACGGCCCGTGGCGACCCTCG

AGGATGTATTCCGGATATTATTCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-434)

AAA domain (AAA_25)

(75-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1H5ZJV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.586	100	0.528
radA	Streptococcus pneumoniae Rx1	49.567	100	0.496
radA	Streptococcus pneumoniae D39	49.567	100	0.496
radA	Streptococcus pneumoniae R6	49.567	100	0.496
radA	Streptococcus pneumoniae TIGR4	49.567	100	0.496
radA	Streptococcus mitis NCTC 12261	49.567	100	0.496
radA	Streptococcus mitis SK321	49.567	100	0.496

Detailed information NTG0425706