Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   GYO_RS28485 Genome accession   NC_016047
Coordinates   1316551..1317504 (+) Length   317 a.a.
NCBI ID   WP_014113356.1    Uniprot ID   G4NWD1
Organism   Bacillus spizizenii TU-B-10     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1311551..1322504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS28460 (GYO_1429) argF 1313380..1314339 (+) 960 WP_014113353.1 ornithine carbamoyltransferase -
  GYO_RS28465 (GYO_1430) - 1314425..1314604 (+) 180 WP_003224549.1 YjzC family protein -
  GYO_RS28470 (GYO_1431) - 1314650..1314835 (-) 186 WP_003224551.1 YjzD family protein -
  GYO_RS28475 (GYO_1432) - 1315085..1315819 (+) 735 WP_014113354.1 hypothetical protein -
  GYO_RS28480 (GYO_1433) - 1315903..1316460 (+) 558 WP_014113355.1 hypothetical protein -
  GYO_RS28485 (GYO_1434) med 1316551..1317504 (+) 954 WP_014113356.1 transcriptional regulator Med Regulator
  GYO_RS28490 (GYO_1435) comZ 1317519..1317710 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  GYO_RS28495 (GYO_1436) - 1317740..1317967 (-) 228 WP_072183380.1 hypothetical protein -
  GYO_RS28500 (GYO_1437) fabH 1318133..1319071 (+) 939 WP_014113357.1 beta-ketoacyl-ACP synthase III -
  GYO_RS28505 (GYO_1438) fabF 1319096..1320337 (+) 1242 WP_014113358.1 beta-ketoacyl-ACP synthase II -
  GYO_RS28510 (GYO_1439) - 1320413..1321198 (+) 786 WP_014113359.1 DUF2268 domain-containing protein -
  GYO_RS28515 (GYO_1440) appD 1321390..1322376 (+) 987 WP_014113360.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35339.93 Da        Isoelectric Point: 4.7196

>NTDB_id=42569 GYO_RS28485 WP_014113356.1 1316551..1317504(+) (med) [Bacillus spizizenii TU-B-10]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPNIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLKTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=42569 GYO_RS28485 WP_014113356.1 1316551..1317504(+) (med) [Bacillus spizizenii TU-B-10]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGTTGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCAAAATATAATGTGGATGTCTACTATAAAGAAGGCGTTAAAACAGATGAAGATATTATAAATGCGATTGAGGAT
TTTCATAAGCGGGGCGTTAATCTTCTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGTGAAGATTA
TCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAA
TGGGTTTCTTTGGAGGAATGACAGCTGCCCATATGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACTTGGCAG
CCGGAGGTTGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGAATATAGAAGTAAACACAAAATATACGGATCATTG
GGATGATGATACGACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGATG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGCCTTTATGCCATCGGATACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCTTATGAAATCATCGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGACCTGAAAACGGGAGTTGTTGAAATGGGAACATTCAGCCCGCTTGTCGATA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGAACTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

98.423

100

0.984

Multiple sequence alignment