Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GYO_RS28050 Genome accession   NC_016047
Coordinates   1230283..1230861 (+) Length   192 a.a.
NCBI ID   WP_014113279.1    Uniprot ID   G4NRT9
Organism   Bacillus spizizenii TU-B-10     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1225283..1235861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS44305 - 1225795..1226310 (-) 516 WP_371864110.1 methyl-accepting chemotaxis protein -
  GYO_RS44310 - 1226599..1227177 (-) 579 Protein_1204 protoglobin domain-containing protein -
  GYO_RS28035 (GYO_1341) - 1227232..1228761 (-) 1530 WP_014113276.1 FAD-dependent oxidoreductase -
  GYO_RS28040 (GYO_1342) - 1228873..1229730 (+) 858 WP_014113277.1 SDR family oxidoreductase -
  GYO_RS28045 (GYO_1343) - 1229757..1229990 (-) 234 WP_014113278.1 IDEAL domain-containing protein -
  GYO_RS28050 (GYO_1344) comK 1230283..1230861 (+) 579 WP_014113279.1 competence transcription factor ComK Regulator
  GYO_RS28055 (GYO_1345) - 1230907..1231806 (-) 900 WP_014113280.1 SDR family oxidoreductase -
  GYO_RS28060 (GYO_1347) - 1232024..1232293 (+) 270 WP_014113282.1 excalibur calcium-binding domain-containing protein -
  GYO_RS28065 (GYO_1348) - 1232336..1233805 (-) 1470 WP_014113283.1 sodium:solute symporter -
  GYO_RS28070 (GYO_1349) - 1233802..1234002 (-) 201 WP_014113284.1 DUF3311 domain-containing protein -
  GYO_RS28075 (GYO_1350) - 1234227..1234589 (-) 363 WP_014113285.1 hypothetical protein -
  GYO_RS28080 (GYO_1351) - 1234743..1235366 (+) 624 WP_014113286.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22355.66 Da        Isoelectric Point: 7.6610

>NTDB_id=42566 GYO_RS28050 WP_014113279.1 1230283..1230861(+) (comK) [Bacillus spizizenii TU-B-10]
MSQKTDAPLESYEVSGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=42566 GYO_RS28050 WP_014113279.1 1230283..1230861(+) (comK) [Bacillus spizizenii TU-B-10]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAGCGGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATTTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGTATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACAATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAGAACCAGGTATACCGGACAGCATGGCTAAGAACCAAATTCCAAGACAGAATCGAACAC
CGTGTGCCAAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

97.396

100

0.974

Multiple sequence alignment