Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   MFABIIPG_RS01695 Genome accession   NZ_CP049240
Coordinates   368250..369068 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Ax270     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363250..374068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFABIIPG_RS01660 - 363832..363962 (-) 131 Protein_318 hypothetical protein -
  MFABIIPG_RS01665 (MFABIIPG_00331) rpoZ 364001..364279 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  MFABIIPG_RS01670 (MFABIIPG_00332) gmk 364352..364981 (-) 630 WP_000015937.1 guanylate kinase -
  MFABIIPG_RS01675 (MFABIIPG_00333) ispH 365104..366054 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MFABIIPG_RS01680 (MFABIIPG_00334) fimU 366224..366697 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  MFABIIPG_RS01685 (MFABIIPG_00335) pilV 366691..367251 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  MFABIIPG_RS01690 (MFABIIPG_00336) pilW 367252..368253 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  MFABIIPG_RS01695 (MFABIIPG_00337) pilX 368250..369068 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  MFABIIPG_RS01700 (MFABIIPG_00338) pilY1 369080..372934 (+) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  MFABIIPG_RS01705 (MFABIIPG_00339) pilY2 372945..373427 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  MFABIIPG_RS01710 (MFABIIPG_00340) pilE 373424..373849 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=425659 MFABIIPG_RS01695 WP_000149374.1 368250..369068(+) (pilX) [Acinetobacter baumannii strain Ax270]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=425659 MFABIIPG_RS01695 WP_000149374.1 368250..369068(+) (pilX) [Acinetobacter baumannii strain Ax270]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993