Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   G5B98_RS02030 Genome accession   NZ_CP049239
Coordinates   403823..404767 (+) Length   314 a.a.
NCBI ID   WP_196087038.1    Uniprot ID   -
Organism   Campylobacter concisus strain P3UCO1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 398823..409767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5B98_RS02020 (G5B98_02025) polA 400027..402663 (-) 2637 WP_196087036.1 DNA polymerase I -
  G5B98_RS02025 (G5B98_02030) - 402783..403826 (+) 1044 WP_196087037.1 glycosyltransferase family 4 protein -
  G5B98_RS02030 (G5B98_02035) waaF 403823..404767 (+) 945 WP_196087038.1 lipopolysaccharide heptosyltransferase II Regulator
  G5B98_RS02035 (G5B98_02040) exbB 404903..405331 (+) 429 WP_054196205.1 TonB-system energizer ExbB -
  G5B98_RS02040 (G5B98_02045) exbD 405318..405701 (+) 384 WP_072593836.1 TonB system transport protein ExbD -
  G5B98_RS02045 (G5B98_02050) - 405676..406452 (+) 777 WP_232524608.1 energy transducer TonB -
  G5B98_RS02055 (G5B98_02060) - 407016..408683 (+) 1668 WP_196087039.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35658.97 Da        Isoelectric Point: 9.5003

>NTDB_id=425642 G5B98_RS02030 WP_196087038.1 403823..404767(+) (waaF) [Campylobacter concisus strain P3UCO1]
MRVFIELPTWLGDAVMASAAIENLSKNAKNIVFFGSYVACELYKSHPKCEKVVIDDSKKQNSRYLSLIKTASKLGKFDIA
ISFRSSFASKFLLFFLKATQKFCFKKSSESLHQVQKYLNFIKQSLNLKEILNELKIYYEAKKSEQKLLVLNPGASYGSAK
RWYPHYFAEVALHFKDEFDVKITGSKAELEICNEIEQILLQNGMKCENLAGKTSIKELCEVIGSIKNGIFLTNDSGPMHI
AAAYKVPLVALFGPTKFKETSPWQDESAKIVHLNLECMPCMKRVCPIKTHACMKELTPKIVIAEIELLRKKLNF

Nucleotide


Download         Length: 945 bp        

>NTDB_id=425642 G5B98_RS02030 WP_196087038.1 403823..404767(+) (waaF) [Campylobacter concisus strain P3UCO1]
GTGAGAGTTTTTATAGAGCTTCCAACTTGGCTTGGAGATGCTGTGATGGCGAGCGCAGCGATAGAAAATTTAAGTAAAAA
TGCTAAAAATATTGTATTTTTTGGCTCTTACGTGGCCTGTGAGCTTTATAAATCACATCCAAAGTGCGAAAAAGTAGTCA
TTGACGATAGTAAAAAGCAAAACTCAAGATATTTAAGTCTTATAAAAACGGCTAGCAAGCTTGGAAAATTTGATATCGCT
ATTAGTTTTAGAAGCTCATTTGCTAGTAAATTTTTGCTATTTTTTCTAAAAGCAACGCAAAAATTTTGCTTTAAAAAGAG
TAGCGAGAGCTTGCATCAGGTGCAGAAATATCTAAATTTCATAAAGCAAAGCCTAAATTTAAAAGAAATTTTAAACGAGC
TAAAGATTTACTATGAAGCTAAAAAAAGTGAGCAAAAGCTCCTTGTTCTAAATCCAGGTGCTAGCTACGGAAGTGCCAAA
AGGTGGTATCCGCACTATTTTGCAGAGGTTGCACTGCACTTTAAAGATGAATTTGATGTAAAGATTACTGGCTCAAAAGC
CGAGCTTGAGATCTGCAATGAAATCGAGCAAATACTCTTGCAAAATGGTATGAAATGTGAAAATTTAGCTGGAAAAACGA
GCATAAAAGAGCTTTGTGAGGTTATAGGCTCTATAAAAAATGGTATCTTTTTGACAAACGATAGTGGTCCTATGCATATC
GCAGCTGCCTATAAAGTGCCACTTGTGGCTCTTTTTGGACCGACTAAATTTAAAGAGACTAGCCCATGGCAAGACGAAAG
TGCAAAGATAGTGCACTTAAATTTAGAGTGTATGCCATGCATGAAGCGAGTATGCCCTATAAAAACACATGCCTGCATGA
AGGAGCTTACGCCAAAAATAGTCATTGCTGAAATAGAGCTGCTAAGAAAAAAATTAAATTTTTGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(76-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.664

100

0.487