Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   G5B95_RS01905 Genome accession   NZ_CP049237
Coordinates   392533..393477 (+) Length   314 a.a.
NCBI ID   WP_103577043.1    Uniprot ID   -
Organism   Campylobacter concisus strain H1O1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 387533..398477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5B95_RS01890 (G5B95_01895) - 388263..388661 (+) 399 WP_230853962.1 DUF2809 domain-containing protein -
  G5B95_RS01895 (G5B95_01900) polA 388737..391373 (-) 2637 WP_103577041.1 DNA polymerase I -
  G5B95_RS01900 (G5B95_01905) - 391493..392536 (+) 1044 WP_103577042.1 glycosyltransferase family 4 protein -
  G5B95_RS01905 (G5B95_01910) waaF 392533..393477 (+) 945 WP_103577043.1 lipopolysaccharide heptosyltransferase II Regulator
  G5B95_RS01910 (G5B95_01915) exbB 393612..394040 (+) 429 WP_103577044.1 TonB-system energizer ExbB -
  G5B95_RS01915 (G5B95_01920) exbD 394027..394410 (+) 384 WP_103577045.1 TonB system transport protein ExbD -
  G5B95_RS01920 (G5B95_01925) - 394385..395161 (+) 777 WP_103577046.1 energy transducer TonB -
  G5B95_RS01930 (G5B95_01935) - 395732..397399 (+) 1668 WP_087585498.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35544.74 Da        Isoelectric Point: 9.6896

>NTDB_id=425621 G5B95_RS01905 WP_103577043.1 392533..393477(+) (waaF) [Campylobacter concisus strain H1O1]
MRVFIELPTWLGDAVMASAAIENLSKNAKNIVFFGSYVACELYKSHPKCEKVVIDNSKKQSSRYLSLIKTARKLGKFDIA
ISFRSSFASKFLLFFLKATQKFCFKKSGEGLHQVQKYLKFVQQSLNLKEISNELKIYYDAQKSEQKLLVLNPGASYGSAK
RWYPHYFADVALHFKDEFNVKITGSKAELEICNEIEQILTQNGAKCENLAGKTSIKELCELIGSIKNGIFLTNDSGPMHI
AAAYKVPLVALFGPTKFKETSPWQDESAKIVHLNLECMPCMKRVCPIKTHACMKELTPKMVIAEIELLRKKLNF

Nucleotide


Download         Length: 945 bp        

>NTDB_id=425621 G5B95_RS01905 WP_103577043.1 392533..393477(+) (waaF) [Campylobacter concisus strain H1O1]
GTGAGAGTGTTTATAGAGCTTCCAACTTGGCTTGGAGATGCTGTGATGGCGAGCGCAGCGATAGAAAATTTAAGTAAAAA
TGCTAAAAATATTGTATTTTTTGGCTCTTATGTGGCCTGTGAGCTTTATAAATCACATCCAAAGTGCGAAAAAGTAGTTA
TTGACAATAGTAAAAAGCAAAGCTCAAGATATTTAAGCCTTATAAAAACAGCTAGAAAGCTTGGAAAATTTGATATTGCT
ATTAGTTTTAGAAGCTCATTTGCTAGTAAATTTTTGCTATTTTTTCTAAAAGCAACGCAAAAATTTTGCTTTAAAAAGAG
TGGTGAAGGCTTGCATCAGGTGCAAAAATATCTAAAATTTGTACAGCAAAGCCTAAATTTAAAAGAAATTTCAAACGAAC
TAAAAATTTACTATGATGCACAAAAAAGCGAGCAAAAGCTCCTCGTGCTAAATCCAGGTGCTAGCTACGGAAGTGCCAAA
AGGTGGTACCCGCACTATTTTGCAGATGTTGCACTTCATTTTAAAGACGAATTTAATGTGAAGATCACTGGCTCAAAAGC
TGAGCTTGAAATTTGTAATGAAATCGAGCAAATACTTACACAAAATGGTGCAAAATGTGAAAATTTAGCTGGAAAAACGA
GTATAAAAGAGCTTTGTGAACTAATAGGCTCTATAAAAAATGGCATCTTTTTGACAAATGATAGTGGTCCTATGCATATC
GCAGCTGCTTATAAAGTGCCACTTGTGGCTCTTTTTGGACCGACTAAATTTAAAGAGACTAGCCCATGGCAAGATGAAAG
CGCAAAGATAGTGCATTTAAATTTAGAGTGTATGCCATGTATGAAGCGAGTGTGCCCTATAAAAACACATGCCTGTATGA
AGGAGCTCACGCCAAAAATGGTTATTGCTGAAATAGAGCTATTAAGAAAGAAATTAAATTTTTGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(77-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.04

100

0.481