Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   G5B96_RS07460 Genome accession   NZ_CP049232
Coordinates   1520057..1521010 (+) Length   317 a.a.
NCBI ID   WP_196088555.1    Uniprot ID   A0A7S9X7H0
Organism   Campylobacter concisus strain H9O-S2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515057..1526010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5B96_RS07440 (G5B96_07460) - 1515665..1516702 (-) 1038 WP_107849782.1 glycosyltransferase -
  G5B96_RS07445 (G5B96_07465) - 1516680..1517996 (-) 1317 WP_021088628.1 O-antigen ligase family protein -
  G5B96_RS07450 (G5B96_07470) - 1517962..1518897 (-) 936 WP_021088591.1 glycosyltransferase family 9 protein -
  G5B96_RS07455 (G5B96_07475) - 1519029..1520060 (+) 1032 WP_196088554.1 glycosyltransferase family 4 protein -
  G5B96_RS07460 (G5B96_07480) waaF 1520057..1521010 (+) 954 WP_196088555.1 lipopolysaccharide heptosyltransferase II Regulator
  G5B96_RS07465 (G5B96_07485) - 1521054..1521311 (-) 258 WP_257639680.1 SelT/SelW/SelH family (seleno)protein -
  G5B96_RS07470 (G5B96_07490) - 1521393..1521944 (+) 552 WP_103575625.1 DJ-1 family glyoxalase III -
  G5B96_RS07475 (G5B96_07495) - 1522169..1522414 (+) 246 WP_009294719.1 RNA-binding protein -
  G5B96_RS07480 (G5B96_07500) - 1522392..1523285 (+) 894 WP_196088556.1 glutamate--tRNA ligase family protein -
  G5B96_RS07485 (G5B96_07505) - 1523271..1523978 (-) 708 WP_196088557.1 DUF6882 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35312.45 Da        Isoelectric Point: 9.9506

>NTDB_id=425604 G5B96_RS07460 WP_196088555.1 1520057..1521010(+) (waaF) [Campylobacter concisus strain H9O-S2]
MRVFIELPTWLGDSVMASAAIENLVQNEKNLQIVFFGSFVACELYKSHPNCEKVVVDESKKAKFRLLSLAKSAKSLGKFD
LALSFRSSFASKFLLFFINARQKAVFKKSKTVLHQVLKYANFVKNALGLGEISTQLKLHFTPQISSKKTLALNPGASYGS
AKRWYPEYFAQVALNFKDEFEIVIFGGKGEQEICEKIEQILKENGVACQNLAGKTSVKELCERIAGLSQNGIFVTNDSGP
MHVAAAFRVPTIALFGPTKFSETSPWGNKFAKIVHLNLACMPCMKRVCPLKTHACMKELKPQMVIDEINLLRKESGI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=425604 G5B96_RS07460 WP_196088555.1 1520057..1521010(+) (waaF) [Campylobacter concisus strain H9O-S2]
ATGAGAGTTTTTATCGAGCTTCCAACCTGGCTTGGTGATAGTGTGATGGCAAGTGCTGCGATCGAAAATTTAGTGCAAAA
TGAGAAGAATTTACAAATCGTTTTTTTTGGCTCATTTGTAGCTTGCGAACTTTACAAAAGCCATCCAAACTGCGAAAAGG
TGGTCGTTGATGAGAGCAAAAAGGCTAAATTTAGACTTTTATCCCTTGCTAAAAGTGCAAAAAGTCTTGGTAAATTTGAT
CTAGCTCTTAGCTTTAGAAGCTCATTTGCTAGTAAATTTTTGCTATTTTTTATAAACGCTAGGCAAAAGGCTGTTTTTAA
AAAGAGCAAAACCGTCCTTCATCAGGTGCTAAAATATGCAAATTTTGTAAAAAATGCCCTTGGCTTGGGAGAAATTTCTA
CTCAGCTAAAGCTACATTTTACACCTCAAATTTCAAGCAAAAAAACACTAGCTCTAAATCCAGGTGCGAGCTACGGAAGT
GCGAAAAGATGGTACCCAGAGTACTTTGCGCAAGTGGCTTTAAATTTTAAAGATGAGTTTGAGATAGTCATCTTTGGTGG
CAAAGGCGAGCAAGAAATTTGTGAAAAAATTGAGCAAATTTTAAAAGAAAATGGCGTAGCTTGCCAAAATTTAGCTGGCA
AAACCAGCGTCAAAGAGCTTTGTGAGCGCATAGCTGGGCTTAGTCAAAATGGCATTTTTGTCACAAACGATAGCGGTCCT
ATGCACGTAGCTGCCGCCTTTCGTGTGCCAACGATCGCTCTTTTTGGACCGACAAAATTTAGTGAAACCTCGCCATGGGG
CAATAAATTTGCAAAGATAGTGCATCTAAATTTAGCTTGCATGCCCTGTATGAAGCGAGTTTGCCCGCTAAAAACGCATG
CTTGCATGAAAGAACTCAAGCCACAAATGGTGATAGATGAGATAAATTTACTAAGAAAAGAGAGTGGGATTTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(113-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9X7H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.541

100

0.511