Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G6Z81_RS05795 Genome accession   NZ_CP049231
Coordinates   1165633..1167012 (-) Length   459 a.a.
NCBI ID   WP_006733667.1    Uniprot ID   -
Organism   Lactobacillus iners strain C0254C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1160633..1172012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z81_RS05770 (G6Z81_05770) - 1160676..1161221 (-) 546 WP_006732437.1 hypothetical protein -
  G6Z81_RS05775 (G6Z81_05775) rlmB 1161334..1162110 (-) 777 WP_006730544.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G6Z81_RS05780 (G6Z81_05780) - 1162091..1162534 (-) 444 WP_163623777.1 Mini-ribonuclease 3 -
  G6Z81_RS05785 (G6Z81_05785) cysS 1162521..1163933 (-) 1413 WP_163623776.1 cysteine--tRNA ligase -
  G6Z81_RS05790 (G6Z81_05790) gltX 1164054..1165553 (-) 1500 WP_006737771.1 glutamate--tRNA ligase -
  G6Z81_RS05795 (G6Z81_05795) radA 1165633..1167012 (-) 1380 WP_006733667.1 DNA repair protein RadA Machinery gene
  G6Z81_RS05800 (G6Z81_05800) - 1167012..1167563 (-) 552 WP_006729453.1 hypothetical protein -
  G6Z81_RS05805 (G6Z81_05805) - 1167711..1169057 (+) 1347 Protein_1067 C1 family peptidase -
  G6Z81_RS05810 (G6Z81_05810) - 1169098..1170033 (-) 936 WP_006732426.1 AAA family ATPase -
  G6Z81_RS05815 (G6Z81_05815) - 1170097..1170774 (-) 678 WP_006734768.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  G6Z81_RS05820 (G6Z81_05820) - 1170776..1170976 (-) 201 WP_006729449.1 hypothetical protein -
  G6Z81_RS05825 (G6Z81_05825) - 1170979..1171215 (-) 237 WP_006729448.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50386.22 Da        Isoelectric Point: 7.6768

>NTDB_id=425595 G6Z81_RS05795 WP_006733667.1 1165633..1167012(-) (radA) [Lactobacillus iners strain C0254C1]
MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNEPKKLSEIDIKKQIRITTPFS
ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSISNAHKVLYVSGEESASQIKMRAERLHISDTELLLYSETNMENI
REQIVDLKPEFLVIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVVSLEGTRPILADIQALVTPTA
FGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGL
TGEIRRINNIEARVKEAATRGFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=425595 G6Z81_RS05795 WP_006733667.1 1165633..1167012(-) (radA) [Lactobacillus iners strain C0254C1]
ATGGCAAAATTAAAAACTCAATATCGTTGTAAGAATTGCGATTATGTATCAGCTTCTTATTTAGGCCGTTGTCCAAATTG
CGGTGCATGGAATCAATTGGAAAAAGAGACGGAAGTTGCCAAAACTACTTCCAATCGGCTTACTGCTAGTAGATTAATTA
CTGCTATAGGTAATAATGAGCCTAAAAAATTAAGTGAGATAGATATTAAAAAGCAAATTCGTATTACTACTCCATTTTCT
GAATTAAATCGTGTGCTGGGTGGTGGAATAGTTCCTGGATCTTTAGTACTTGTTGGTGGTGATCCTGGTATAGGCAAATC
AACTTTAATGCTACAAATTATGGGTAGTATTTCCAATGCTCACAAGGTTTTATATGTTTCAGGTGAGGAATCTGCAAGTC
AAATTAAAATGCGTGCAGAAAGGCTACATATTAGTGATACAGAATTACTTTTATATTCTGAAACTAATATGGAAAATATT
CGCGAACAGATAGTTGATCTTAAGCCGGAATTTTTGGTCATCGATTCAATTCAGACAATGAATGAGCCATCGCAAGATTC
GATGGTAGGATCTGCTACTCAAGTTAGAGAAGTTACAGCGGAATTACTTAAAATTGCTAAAATTGATAAGATAACAGTTT
TCGTTATTGGCCATGTGACCAAAGAAGGTGCTATTGCTGGACCTAAAATCTTAGAACATATGGTTGATACAGTGTTATAT
TTTGAAGGTGATAAGCACCATTCTTATAGAATTCTGCGTTCTGTTAAAAATCGTTTCGGTGCTACCAATGAAATAGGAAT
GTTTGAGATGAAGGAGGAAGGACTGAGTGAGGTAACTAATCCTTCTGCTGTTTTCTTAGATGAAAGATTACCTAATTCTA
CTGGTTCTGCTATTGTTGTATCACTTGAAGGCACTAGACCTATTTTAGCTGATATTCAGGCATTAGTGACGCCTACCGCT
TTTGGCTATGCTAAGAGAACAACATCTGGATTAGATTATAATCGAGTGGCGTTATTACTAGCTGTTTTAGAAAAAAGGGG
TAATTTGATGTTGCAAAATCAAGATGCTTTCTTGACAGCTACAGGAGGAATTAAACTTAATGAACCAGCTATTGATTTAG
CTATTTGTATGGCAGTAGCTTCTAGTTATAAGAATAAAGAAATAGCAGTTACTGATTGTTTCGTTGGTGAGGTAGGACTT
ACTGGTGAGATTAGACGAATTAATAATATTGAAGCTCGTGTCAAAGAGGCTGCTACTAGAGGATTTAAACGCATTTTTGT
TCCGAAATATAATGTATCAGCCAAATTACAATCACACACAACTATTGAAATTGTAGGTGTAATTAGTTTAATGGAAGCAT
TGAAGATTGAGTTTACATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(74-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.297

99.782

0.582
  radA Streptococcus mitis NCTC 12261

58.297

99.782

0.582
  radA Streptococcus pneumoniae Rx1

58.297

99.782

0.582
  radA Streptococcus pneumoniae D39

58.297

99.782

0.582
  radA Streptococcus pneumoniae R6

58.297

99.782

0.582
  radA Streptococcus pneumoniae TIGR4

58.297

99.782

0.582
  radA Bacillus subtilis subsp. subtilis str. 168

54.486

99.564

0.542