Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G6Z83_RS06045 Genome accession   NZ_CP049228
Coordinates   1240207..1241586 (-) Length   459 a.a.
NCBI ID   WP_006735603.1    Uniprot ID   A0A6G7B9Z0
Organism   Lactobacillus iners strain C0210C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1235207..1246586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z83_RS06020 (G6Z83_06020) - 1235250..1235795 (-) 546 WP_006732437.1 hypothetical protein -
  G6Z83_RS06025 (G6Z83_06025) rlmB 1235908..1236684 (-) 777 WP_006730544.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G6Z83_RS06030 (G6Z83_06030) - 1236665..1237108 (-) 444 WP_006729458.1 ribonuclease III domain-containing protein -
  G6Z83_RS06035 (G6Z83_06035) cysS 1237095..1238507 (-) 1413 WP_164824095.1 cysteine--tRNA ligase -
  G6Z83_RS06040 (G6Z83_06040) gltX 1238628..1240127 (-) 1500 WP_006737771.1 glutamate--tRNA ligase -
  G6Z83_RS06045 (G6Z83_06045) radA 1240207..1241586 (-) 1380 WP_006735603.1 DNA repair protein RadA Machinery gene
  G6Z83_RS06050 (G6Z83_06050) - 1241586..1242137 (-) 552 WP_006729453.1 hypothetical protein -
  G6Z83_RS06055 (G6Z83_06055) - 1242285..1243631 (+) 1347 WP_006729452.1 C1 family peptidase -
  G6Z83_RS06060 (G6Z83_06060) - 1243672..1244607 (-) 936 WP_006729451.1 AAA family ATPase -
  G6Z83_RS06065 (G6Z83_06065) - 1244671..1245348 (-) 678 WP_006732429.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  G6Z83_RS06070 (G6Z83_06070) - 1245350..1245550 (-) 201 WP_006729449.1 hypothetical protein -
  G6Z83_RS06075 (G6Z83_06075) - 1245553..1245789 (-) 237 WP_006729448.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50384.18 Da        Isoelectric Point: 7.6768

>NTDB_id=425565 G6Z83_RS06045 WP_006735603.1 1240207..1241586(-) (radA) [Lactobacillus iners strain C0210C1]
MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITSIGNNEPKKLSEIDIKKQIRITTPFS
ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANSHKVLYVSGEESASQIKLRAERLHISDTELLLYSETNMENI
REQIVDLKPEFLVIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVVSLEGTRPILADIQALVTPTA
FGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGL
TGEIRRINNIEARVKEAATRGFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=425565 G6Z83_RS06045 WP_006735603.1 1240207..1241586(-) (radA) [Lactobacillus iners strain C0210C1]
ATGGCAAAATTAAAAACTCAATATCGTTGTAAGAATTGCGACTATGTATCAGCTTCTTATTTAGGCCGTTGTCCAAATTG
TGGTGCATGGAATCAATTGGAAAAAGAGACTGAAGTTGCTAAAACTACTTCCAATCGGCTTACTGCTAGTAGATTAATTA
CATCTATAGGTAATAATGAGCCTAAAAAATTAAGTGAGATAGACATTAAAAAGCAAATTCGTATTACTACTCCATTTTCT
GAATTAAATCGTGTGCTGGGTGGCGGAATAGTTCCTGGATCTTTAGTGCTTGTTGGTGGTGATCCTGGTATAGGTAAATC
AACTTTAATGCTACAAATTATGGGGAGTATTGCCAATTCTCATAAGGTTTTATATGTTTCAGGTGAAGAATCTGCAAGTC
AAATTAAATTGCGTGCAGAAAGGCTACATATTAGTGATACAGAATTACTTTTATATTCTGAAACTAATATGGAAAATATT
AGAGAACAGATAGTTGATCTTAAGCCGGAATTTTTGGTCATCGATTCAATTCAGACAATGAATGAGCCATCGCAAGATTC
GATGGTAGGATCTGCTACTCAAGTTAGAGAAGTTACAGCGGAATTACTTAAAATTGCTAAAATTGATAAGATAACAGTTT
TCGTTATTGGCCATGTGACCAAAGAAGGTGCTATTGCTGGACCTAAAATCTTAGAACATATGGTTGATACAGTGTTATAT
TTTGAAGGTGATAAGCACCATTCTTATAGAATTCTGCGTTCTGTTAAAAATCGTTTCGGTGCTACCAACGAAATAGGAAT
GTTTGAGATGAAGGAGGAAGGACTGAGTGAGGTAACTAATCCTTCTGCCGTTTTCTTAGATGAAAGATTACCTAATTCTA
CTGGTTCGGCTATTGTTGTATCACTTGAAGGAACTAGACCTATTTTAGCTGATATTCAGGCACTAGTGACTCCTACCGCT
TTTGGCTATGCTAAGAGAACAACATCTGGATTAGATTATAATCGAGTGGCTTTATTACTAGCTGTTTTAGAAAAAAGGGG
TAATTTGATGTTACAAAATCAAGATGCTTTCTTGACTGCTACAGGAGGAATTAAACTTAATGAACCAGCTATTGATTTAG
CTATTTGTATGGCAGTAGCTTCTAGTTATAAGAATAAAGAAATAGCAGTTACTGATTGTTTCGTTGGTGAGGTAGGACTT
ACTGGTGAGATTAGACGAATTAATAATATTGAAGCTCGTGTCAAGGAGGCTGCTACTAGAGGATTTAAACGCATTTTTGT
TCCGAAATATAATGTATCAGCCAAATTACAATCACACACAACTATTGAAATTGTAGGTGTAATTAGTTTAATGGAAGCAT
TGAAGATTGAGTTTACATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7B9Z0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.297

99.782

0.582
  radA Streptococcus mitis NCTC 12261

58.297

99.782

0.582
  radA Streptococcus pneumoniae Rx1

58.297

99.782

0.582
  radA Streptococcus pneumoniae D39

58.297

99.782

0.582
  radA Streptococcus pneumoniae R6

58.297

99.782

0.582
  radA Streptococcus pneumoniae TIGR4

58.297

99.782

0.582
  radA Bacillus subtilis subsp. subtilis str. 168

54.705

99.564

0.545