Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GYO_RS24295 Genome accession   NC_016047
Coordinates   487775..488224 (-) Length   149 a.a.
NCBI ID   WP_146881512.1    Uniprot ID   -
Organism   Bacillus spizizenii TU-B-10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 482775..493224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYO_RS43900 (GYO_0548) - 483132..483311 (+) 180 Protein_485 hypothetical protein -
  GYO_RS24260 (GYO_0549) - 483308..483763 (+) 456 WP_014112607.1 RDD family protein -
  GYO_RS24265 (GYO_0550) - 483846..484178 (+) 333 WP_014112608.1 YckD family protein -
  GYO_RS24270 (GYO_0551) - 484313..484735 (+) 423 WP_087941761.1 MarR family winged helix-turn-helix transcriptional regulator -
  GYO_RS24275 (GYO_0552) - 484723..485064 (+) 342 WP_014112610.1 DUF3147 family protein -
  GYO_RS24280 (GYO_0553) - 485084..485812 (+) 729 WP_014112611.1 AAA family ATPase -
  GYO_RS24285 (GYO_0554) bglC 485885..487318 (+) 1434 WP_014112612.1 6-phospho-beta-glucosidase -
  GYO_RS24290 (GYO_0555) nin/comJ 487354..487752 (-) 399 WP_014112613.1 DNA-entry nuclease inhibitor Regulator
  GYO_RS24295 (GYO_0556) nucA/comI 487775..488224 (-) 450 WP_146881512.1 DNA-entry nuclease Machinery gene
  GYO_RS24300 (GYO_0557) tlpC 488398..490122 (-) 1725 WP_014112615.1 methyl-accepting chemotaxis protein TlpC -
  GYO_RS24305 (GYO_0558) hxlB 490234..490791 (-) 558 WP_014112616.1 6-phospho-3-hexuloisomerase -
  GYO_RS24310 (GYO_0559) hxlA 490796..491428 (-) 633 WP_014112617.1 3-hexulose-6-phosphate synthase -
  GYO_RS24315 (GYO_0560) hxlR 491660..492022 (+) 363 WP_014112618.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16391.38 Da        Isoelectric Point: 4.4321

>NTDB_id=42556 GYO_RS24295 WP_146881512.1 487775..488224(-) (nucA/comI) [Bacillus spizizenii TU-B-10]
MNITMDILKTILLVIVVIAAAAVGLIKGDFFSADQKTSQTKEYDETIALPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=42556 GYO_RS24295 WP_146881512.1 487775..488224(-) (nucA/comI) [Bacillus spizizenii TU-B-10]
GTGAACATCACGATGGACATCTTAAAAACAATACTTCTCGTCATCGTGGTCATAGCAGCTGCAGCTGTCGGCCTGATAAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGACGAAACGATCGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGGATGCGATAAATGAGGGGCACTCAGATGTGTGCACCATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACGTACCGCCAAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCTGCTGACAACCGCGGTGCAGGCTCTTGGGTTGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

93.96

100

0.94

Multiple sequence alignment