Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G6Z85_RS06035 Genome accession   NZ_CP049225
Coordinates   1221171..1222550 (-) Length   459 a.a.
NCBI ID   WP_006732434.1    Uniprot ID   -
Organism   Lactobacillus iners strain C0059G1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1216171..1227550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z85_RS06010 (G6Z85_06010) - 1216215..1216760 (-) 546 WP_006733706.1 DNA-directed RNA polymerase sigma-70 factor -
  G6Z85_RS06015 (G6Z85_06015) rlmB 1216872..1217648 (-) 777 WP_006730544.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G6Z85_RS06020 (G6Z85_06020) - 1217629..1218072 (-) 444 WP_006729458.1 Mini-ribonuclease 3 -
  G6Z85_RS06025 (G6Z85_06025) cysS 1218059..1219471 (-) 1413 WP_164799251.1 cysteine--tRNA ligase -
  G6Z85_RS06030 (G6Z85_06030) gltX 1219592..1221091 (-) 1500 WP_006737771.1 glutamate--tRNA ligase -
  G6Z85_RS06035 (G6Z85_06035) radA 1221171..1222550 (-) 1380 WP_006732434.1 DNA repair protein RadA Machinery gene
  G6Z85_RS06040 (G6Z85_06040) - 1222550..1223101 (-) 552 WP_006729453.1 hypothetical protein -
  G6Z85_RS06045 (G6Z85_06045) - 1223249..1224595 (+) 1347 WP_006729452.1 C1 family peptidase -
  G6Z85_RS06050 (G6Z85_06050) - 1224636..1225571 (-) 936 WP_006737799.1 AAA family ATPase -
  G6Z85_RS06055 (G6Z85_06055) - 1225635..1226312 (-) 678 WP_006734768.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  G6Z85_RS06060 (G6Z85_06060) - 1226314..1226514 (-) 201 WP_006729449.1 hypothetical protein -
  G6Z85_RS06065 (G6Z85_06065) - 1226517..1226753 (-) 237 WP_006729448.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50386.22 Da        Isoelectric Point: 7.6768

>NTDB_id=425534 G6Z85_RS06035 WP_006732434.1 1221171..1222550(-) (radA) [Lactobacillus iners strain C0059G1]
MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNEPKKLSEIDIKKQIRITTPFS
ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANSHKVLYVSGEESASQIKMRAERLHISDTELLLYSETNMENI
REQIVDLKPEFLVIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVVSLEGTRPILADIQALVTPTA
FGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGL
TGEIRRINNIEARVKEAATRGFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=425534 G6Z85_RS06035 WP_006732434.1 1221171..1222550(-) (radA) [Lactobacillus iners strain C0059G1]
ATGGCAAAATTAAAAACTCAATATCGTTGTAAGAATTGCGACTATGTATCAGCTTCTTATTTAGGCCGTTGTCCAAATTG
TGGTGCATGGAATCAATTGGAAAAAGAGACTGAAGTTGCTAAAACTACTTCCAATCGGCTTACTGCTAGTAGATTAATTA
CAGCTATAGGTAATAATGAGCCTAAAAAATTAAGTGAGATAGACATTAAAAAGCAAATTCGTATTACTACTCCATTTTCT
GAATTAAATCGTGTGCTGGGTGGCGGAATAGTTCCTGGATCTTTAGTGCTTGTTGGTGGTGATCCTGGTATAGGTAAATC
AACTTTAATGCTACAAATTATGGGGAGTATTGCCAATTCTCATAAGGTTTTATATGTTTCAGGTGAAGAATCTGCAAGTC
AAATTAAAATGCGTGCAGAAAGGCTACATATTAGTGATACAGAATTACTTTTATATTCTGAAACTAATATGGAAAATATT
AGAGAACAGATAGTTGATCTTAAGCCGGAATTTTTGGTCATCGATTCAATTCAGACAATGAATGAGCCATCGCAAGATTC
GATGGTAGGATCTGCTACTCAAGTTAGAGAAGTTACAGCGGAATTACTTAAAATTGCTAAAATTGATAAGATAACAGTTT
TCGTTATTGGCCATGTGACCAAAGAAGGTGCTATTGCTGGACCTAAAATCTTAGAACATATGGTTGATACAGTGTTATAT
TTTGAAGGTGATAAGCACCATTCTTATAGAATTCTGCGTTCTGTGAAAAATCGTTTCGGTGCTACCAACGAAATAGGAAT
GTTTGAGATGAAGGAGGAAGGACTGAGTGAGGTAACTAATCCTTCTGCCGTTTTCTTAGATGAAAGATTACCTAATTCTA
CTGGTTCAGCTATTGTTGTATCACTTGAAGGAACTAGACCTATTTTAGCTGATATTCAGGCACTAGTGACTCCTACCGCT
TTTGGCTATGCTAAGAGAACAACATCTGGATTAGATTATAATCGAGTGGCTTTATTACTAGCTGTTTTAGAAAAAAGGGG
TAATTTGATGTTACAAAATCAAGATGCTTTTTTGACTGCTACAGGAGGAATTAAACTTAATGAACCAGCTATTGATTTAG
CTATTTGTATGGCAGTAGCTTCTAGTTATAAGAATAAAGAAATAGCAGTTACTGATTGTTTCGTTGGTGAGGTAGGACTT
ACTGGTGAGATTAGACGAATTAATAATATTGAAGCTCGTGTCAAGGAGGCTGCTACTAGAGGATTTAAACGCATTTTTGT
TCCGAAATATAATGTATCAGCCAAATTACAATCACACACAACTATTGAAATTGTAGGTGTAATTAGTTTAATGGAAGCAT
TGAAGATTGAGTTTACATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(74-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.079

99.782

0.58
  radA Streptococcus mitis NCTC 12261

58.079

99.782

0.58
  radA Streptococcus pneumoniae Rx1

58.079

99.782

0.58
  radA Streptococcus pneumoniae D39

58.079

99.782

0.58
  radA Streptococcus pneumoniae R6

58.079

99.782

0.58
  radA Streptococcus pneumoniae TIGR4

58.079

99.782

0.58
  radA Bacillus subtilis subsp. subtilis str. 168

54.486

99.564

0.542