Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G6Z86_RS05925 Genome accession   NZ_CP049223
Coordinates   1220354..1221733 (-) Length   459 a.a.
NCBI ID   WP_164798853.1    Uniprot ID   -
Organism   Lactobacillus iners strain C0094A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1215354..1226733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z86_RS05900 (G6Z86_05900) - 1215398..1215943 (-) 546 WP_006733706.1 DNA-directed RNA polymerase sigma-70 factor -
  G6Z86_RS05905 (G6Z86_05905) rlmB 1216055..1216831 (-) 777 WP_006730544.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G6Z86_RS05910 (G6Z86_05910) - 1216812..1217255 (-) 444 WP_006736094.1 ribonuclease III domain-containing protein -
  G6Z86_RS05915 (G6Z86_05915) cysS 1217242..1218654 (-) 1413 WP_006734084.1 cysteine--tRNA ligase -
  G6Z86_RS05920 (G6Z86_05920) gltX 1218775..1220274 (-) 1500 WP_006734071.1 glutamate--tRNA ligase -
  G6Z86_RS05925 (G6Z86_05925) radA 1220354..1221733 (-) 1380 WP_164798853.1 DNA repair protein RadA Machinery gene
  G6Z86_RS05930 (G6Z86_05930) - 1221733..1222284 (-) 552 WP_006729453.1 hypothetical protein -
  G6Z86_RS05935 (G6Z86_05935) - 1222432..1223778 (+) 1347 WP_006736065.1 C1 family peptidase -
  G6Z86_RS05940 (G6Z86_05940) - 1223819..1224754 (-) 936 WP_006729451.1 AAA family ATPase -
  G6Z86_RS05945 (G6Z86_05945) - 1224818..1225495 (-) 678 WP_006732429.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  G6Z86_RS05950 (G6Z86_05950) - 1225497..1225697 (-) 201 WP_006729449.1 hypothetical protein -
  G6Z86_RS05955 (G6Z86_05955) - 1225700..1225936 (-) 237 WP_006729448.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50368.18 Da        Isoelectric Point: 7.6768

>NTDB_id=425519 G6Z86_RS05925 WP_164798853.1 1220354..1221733(-) (radA) [Lactobacillus iners strain C0094A1]
MAKLKTQYRCKNCDYVSASYLGRCPNCGAWNQLEKETEVAKTTSNRLTASRLITAIGNNEPKKLSEIDIKKQIRITTPFS
ELNRVLGGGIVPGSLVLVGGDPGIGKSTLMLQIMGSIANSHKVLYVSGEESASQIKIRAERLHISDTELLLYSETNMENI
REQIVDLKPEFLVIDSIQTMNEPSQDSMVGSATQVREVTAELLKIAKIDKITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDKHHSYRILRSVKNRFGATNEIGMFEMKEEGLSEVTNPSAVFLDERLPNSTGSAIVVSLEGTRPILADIQALVTPTA
FGYAKRTTSGLDYNRVALLLAVLEKRGNLMLQNQDAFLTATGGIKLNEPAIDLAICMAVASSYKNKEIAVTDCFVGEVGL
TGEIRRINNIEARVKEAATRGFKRIFVPKYNVSAKLQSHTTIEIVGVISLMEALKIEFT

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=425519 G6Z86_RS05925 WP_164798853.1 1220354..1221733(-) (radA) [Lactobacillus iners strain C0094A1]
ATGGCAAAATTAAAAACTCAATATCGTTGTAAGAATTGCGACTATGTATCAGCTTCTTATTTAGGCCGTTGTCCAAATTG
TGGTGCATGGAATCAATTGGAAAAAGAGACTGAAGTTGCTAAAACTACTTCCAATCGGCTTACTGCTAGTAGATTAATTA
CAGCTATAGGTAATAATGAGCCTAAAAAATTAAGTGAGATAGACATTAAAAAGCAAATTCGTATTACTACTCCATTTTCT
GAATTAAATCGTGTGCTGGGTGGCGGAATAGTTCCTGGATCTTTAGTGCTTGTTGGTGGTGATCCTGGTATAGGTAAATC
GACTTTAATGCTACAAATTATGGGGAGTATTGCCAATTCTCATAAGGTTTTATATGTTTCAGGTGAAGAATCTGCAAGTC
AAATTAAAATTCGTGCAGAAAGGCTACATATTAGTGATACAGAATTACTTTTATATTCTGAAACTAATATGGAAAATATT
AGAGAACAGATAGTTGATCTTAAGCCGGAATTTTTAGTCATCGATTCAATTCAGACAATGAATGAGCCATCGCAAGATTC
GATGGTAGGATCTGCTACTCAAGTTAGAGAAGTTACAGCGGAATTACTTAAAATTGCTAAAATTGATAAGATAACAGTTT
TTGTTATTGGTCATGTGACCAAAGAAGGTGCTATTGCTGGACCTAAAATCTTAGAACATATGGTTGATACAGTGTTATAT
TTTGAAGGTGATAAGCACCATTCTTATAGAATTCTGCGTTCTGTGAAAAATCGTTTCGGTGCTACCAACGAAATAGGAAT
GTTTGAGATGAAGGAGGAAGGCCTGAGTGAGGTAACTAATCCTTCTGCTGTTTTCTTAGATGAAAGATTACCTAATTCTA
CTGGTTCGGCTATTGTTGTATCACTTGAAGGAACTAGACCTATTTTAGCTGATATTCAGGCACTAGTGACTCCTACCGCT
TTTGGCTATGCTAAGAGAACAACATCTGGATTAGATTATAATCGAGTGGCTTTATTACTAGCTGTTTTAGAAAAAAGGGG
TAATTTGATGTTACAAAATCAAGATGCTTTCTTGACTGCTACAGGAGGAATTAAACTTAATGAACCAGCTATTGATTTAG
CTATTTGTATGGCAGTAGCTTCTAGTTATAAGAATAAAGAAATAGCAGTTACTGATTGTTTCGTTGGTGAGGTAGGACTT
ACTGGTGAGATTAGACGAATTAATAATATTGAAGCTCGTGTCAAGGAGGCTGCTACTAGAGGATTTAAACGCATTTTTGT
TCCGAAATATAATGTATCAGCCAAATTACAATCACACACAACTATTGAAATTGTAGGTGTAATTAGTTTAATGGAAGCAT
TGAAGATTGAGTTTACATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

58.079

99.782

0.58
  radA Streptococcus mitis SK321

58.079

99.782

0.58
  radA Streptococcus pneumoniae Rx1

58.079

99.782

0.58
  radA Streptococcus pneumoniae D39

58.079

99.782

0.58
  radA Streptococcus pneumoniae R6

58.079

99.782

0.58
  radA Streptococcus pneumoniae TIGR4

58.079

99.782

0.58
  radA Bacillus subtilis subsp. subtilis str. 168

54.486

99.564

0.542