Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | GYO_RS21800 | Genome accession | NC_016047 |
| Coordinates | 44919..45203 (-) | Length | 94 a.a. |
| NCBI ID | WP_003218316.1 | Uniprot ID | G4NTA5 |
| Organism | Bacillus spizizenii TU-B-10 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 39919..50203
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYO_RS21760 (GYO_0038) | darA | 39941..40270 (+) | 330 | WP_003218295.1 | cyclic di-AMP receptor DarA | - |
| GYO_RS21765 (GYO_0039) | - | 40283..40723 (+) | 441 | WP_003218297.1 | YaaR family protein | - |
| GYO_RS21770 (GYO_0040) | holB | 40735..41724 (+) | 990 | WP_014112289.1 | DNA polymerase III subunit delta' | - |
| GYO_RS21775 (GYO_0041) | ricT | 41727..42554 (+) | 828 | WP_014112290.1 | competence/sporulation regulator complex protein RicT | - |
| GYO_RS21780 (GYO_0042) | yabA | 42569..42928 (+) | 360 | WP_003218308.1 | replication initiation-control protein YabA | - |
| GYO_RS21785 (GYO_0043) | - | 42987..43730 (+) | 744 | WP_014112291.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| GYO_RS21790 (GYO_0044) | - | 43717..44016 (+) | 300 | WP_014112292.1 | GIY-YIG nuclease family protein | - |
| GYO_RS21795 (GYO_0045) | rsmI | 43991..44869 (+) | 879 | WP_014112293.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| GYO_RS21800 (GYO_0046) | abrB | 44919..45203 (-) | 285 | WP_003218316.1 | transition state genes transcriptional regulator AbrB | Regulator |
| GYO_RS21805 (GYO_0047) | metG | 45704..47698 (+) | 1995 | WP_014112294.1 | methionine--tRNA ligase | - |
| GYO_RS21810 (GYO_0048) | - | 47777..48544 (+) | 768 | WP_014112295.1 | TatD family hydrolase | - |
| GYO_RS21815 (GYO_0049) | - | 48790..50013 (+) | 1224 | WP_014112296.1 | ubiquitin-like domain-containing protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10494.25 Da Isoelectric Point: 6.3482
>NTDB_id=42551 GYO_RS21800 WP_003218316.1 44919..45203(-) (abrB) [Bacillus spizizenii TU-B-10]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAE
QIISEIQNQLQNLK
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAE
QIISEIQNQLQNLK
Nucleotide
Download Length: 285 bp
>NTDB_id=42551 GYO_RS21800 WP_003218316.1 44919..45203(-) (abrB) [Bacillus spizizenii TU-B-10]
ATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTACTCTTGG
AATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGACGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGCGCTGAG
CAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA
ATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTACTCTTGG
AATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGACGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGCGCTGAG
CAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |