Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G6Z93_RS13985 Genome accession   NZ_CP049204
Coordinates   2930519..2931148 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PapM-32-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2925519..2936148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z93_RS13970 (G6Z93_13970) helD 2925761..2927815 (-) 2055 WP_053889718.1 DNA helicase IV -
  G6Z93_RS13975 (G6Z93_13975) yccF 2927938..2928384 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G6Z93_RS13980 (G6Z93_13980) yccS 2928394..2930556 (+) 2163 WP_164476616.1 YccS family putative transporter -
  G6Z93_RS13985 (G6Z93_13985) sxy/tfoX 2930519..2931148 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G6Z93_RS13990 (G6Z93_13990) sulA 2931367..2931876 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  G6Z93_RS13995 (G6Z93_13995) ompA 2932233..2933285 (+) 1053 WP_032223517.1 porin OmpA -
  G6Z93_RS14000 (G6Z93_14000) matP 2933361..2933813 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  G6Z93_RS14005 (G6Z93_14005) ycbZ 2933999..2935759 (+) 1761 WP_062883666.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=425459 G6Z93_RS13985 WP_000839153.1 2930519..2931148(-) (sxy/tfoX) [Escherichia coli strain PapM-32-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=425459 G6Z93_RS13985 WP_000839153.1 2930519..2931148(-) (sxy/tfoX) [Escherichia coli strain PapM-32-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1