Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G6Z99_RS16005 Genome accession   NZ_CP049201
Coordinates   3273735..3274364 (-) Length   209 a.a.
NCBI ID   WP_164475854.1    Uniprot ID   -
Organism   Escherichia coli strain PapRG-04-4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3268735..3279364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z99_RS15990 (G6Z99_15980) helD 3268977..3271031 (-) 2055 WP_069912831.1 DNA helicase IV -
  G6Z99_RS15995 (G6Z99_15985) yccF 3271154..3271600 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G6Z99_RS16000 (G6Z99_15990) yccS 3271610..3273772 (+) 2163 WP_000875045.1 YccS family putative transporter -
  G6Z99_RS16005 (G6Z99_15995) sxy/tfoX 3273735..3274364 (-) 630 WP_164475854.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G6Z99_RS16010 (G6Z99_16000) sulA 3274583..3275092 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  G6Z99_RS16015 (G6Z99_16005) ompA 3275449..3276501 (+) 1053 WP_032223517.1 porin OmpA -
  G6Z99_RS16020 (G6Z99_16010) matP 3276577..3277029 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  G6Z99_RS16025 (G6Z99_16015) ycbZ 3277215..3278975 (+) 1761 WP_062883666.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24176.12 Da        Isoelectric Point: 9.4081

>NTDB_id=425437 G6Z99_RS16005 WP_164475854.1 3273735..3274364(-) (sxy/tfoX) [Escherichia coli strain PapRG-04-4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDMVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=425437 G6Z99_RS16005 WP_164475854.1 3273735..3274364(-) (sxy/tfoX) [Escherichia coli strain PapRG-04-4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACATGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99