Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPPC18_RS05865 Genome accession   NC_017742
Coordinates   1253229..1254278 (+) Length   349 a.a.
NCBI ID   WP_000115492.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan18     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248229..1259278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC18_RS08240 - 1249140..1250378 (-) 1239 Protein_1137 DUF874 family protein -
  HPPC18_RS05855 (HPPC18_05925) asd 1250812..1251852 (-) 1041 WP_000860968.1 aspartate-semialdehyde dehydrogenase -
  HPPC18_RS05860 (HPPC18_05930) hisS 1251839..1253167 (-) 1329 WP_000632436.1 histidine--tRNA ligase -
  HPPC18_RS05865 (HPPC18_05935) waaF 1253229..1254278 (+) 1050 WP_000115492.1 lipopolysaccharide heptosyltransferase II Regulator
  HPPC18_RS05870 (HPPC18_05940) - 1254473..1254691 (-) 219 WP_000744170.1 hypothetical protein -
  HPPC18_RS05875 (HPPC18_05945) - 1254908..1255897 (+) 990 WP_001187424.1 aldo/keto reductase -
  HPPC18_RS05880 (HPPC18_05950) fusA 1256442..1258520 (-) 2079 WP_000101858.1 elongation factor G -
  HPPC18_RS05885 (HPPC18_05955) rpsG 1258532..1258999 (-) 468 WP_001254355.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39423.00 Da        Isoelectric Point: 9.5545

>NTDB_id=42542 HPPC18_RS05865 WP_000115492.1 1253229..1254278(+) (waaF) [Helicobacter pylori PeCan18]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVTAAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHAAASTKTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=42542 HPPC18_RS05865 WP_000115492.1 1253229..1254278(+) (waaF) [Helicobacter pylori PeCan18]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCAACCATTACATGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTACTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGGTAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAATTGGCCTTTAATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGCAGCCGCTAGCACGAAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.15

99.14

0.378

Multiple sequence alignment