Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G6000_RS10330 Genome accession   NZ_CP049198
Coordinates   2118679..2119308 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E686     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2113679..2124308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6000_RS10315 helD 2113921..2115975 (-) 2055 WP_020232990.1 DNA helicase IV -
  G6000_RS10320 yccF 2116098..2116544 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G6000_RS10325 yccS 2116554..2118716 (+) 2163 WP_000875041.1 YccS family putative transporter -
  G6000_RS10330 sxy/tfoX 2118679..2119308 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G6000_RS10335 sulA 2119527..2120036 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G6000_RS10340 ompA 2120393..2121445 (+) 1053 WP_000750418.1 porin OmpA -
  G6000_RS10345 matP 2121520..2121972 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  G6000_RS10350 ycbZ 2122158..2123918 (+) 1761 WP_089502608.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=425411 G6000_RS10330 WP_000839153.1 2118679..2119308(-) (sxy/tfoX) [Escherichia coli strain E686]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=425411 G6000_RS10330 WP_000839153.1 2118679..2119308(-) (sxy/tfoX) [Escherichia coli strain E686]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1