Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G6Z98_RS11685 Genome accession   NZ_CP049197
Coordinates   2416412..2417041 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E597     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2411412..2422041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z98_RS11670 helD 2411654..2413708 (-) 2055 WP_020232990.1 DNA helicase IV -
  G6Z98_RS11675 yccF 2413831..2414277 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G6Z98_RS11680 yccS 2414287..2416449 (+) 2163 WP_000875041.1 YccS family putative transporter -
  G6Z98_RS11685 sxy/tfoX 2416412..2417041 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G6Z98_RS11690 sulA 2417260..2417769 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G6Z98_RS11695 ompA 2418126..2419178 (+) 1053 WP_000750418.1 porin OmpA -
  G6Z98_RS11700 matP 2419253..2419705 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  G6Z98_RS11705 ycbZ 2419891..2421651 (+) 1761 WP_089502608.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=425391 G6Z98_RS11685 WP_000839153.1 2416412..2417041(-) (sxy/tfoX) [Escherichia coli strain E597]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=425391 G6Z98_RS11685 WP_000839153.1 2416412..2417041(-) (sxy/tfoX) [Escherichia coli strain E597]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1