Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G5T40_RS13320 Genome accession   NZ_CP049196
Coordinates   2716876..2717505 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain E118     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2711876..2722505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5T40_RS13305 helD 2712118..2714172 (-) 2055 WP_020232990.1 DNA helicase IV -
  G5T40_RS13310 yccF 2714295..2714741 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G5T40_RS13315 yccS 2714751..2716913 (+) 2163 WP_000875041.1 YccS family putative transporter -
  G5T40_RS13320 sxy/tfoX 2716876..2717505 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G5T40_RS13325 sulA 2717724..2718233 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G5T40_RS13330 ompA 2718590..2719642 (+) 1053 WP_000750418.1 porin OmpA -
  G5T40_RS13335 matP 2719717..2720169 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  G5T40_RS13340 ycbZ 2720355..2722115 (+) 1761 WP_089502608.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=425369 G5T40_RS13320 WP_000839153.1 2716876..2717505(-) (sxy/tfoX) [Escherichia coli strain E118]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=425369 G5T40_RS13320 WP_000839153.1 2716876..2717505(-) (sxy/tfoX) [Escherichia coli strain E118]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1