Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G6O62_RS03170 Genome accession   NZ_CP049175
Coordinates   581801..582430 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei strain 7111.69     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 576801..587430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6O62_RS03155 (G6O62_03165) helD 577043..579097 (-) 2055 WP_000420537.1 DNA helicase IV -
  G6O62_RS03160 (G6O62_03170) - 579220..579666 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G6O62_RS03165 (G6O62_03175) yccS 579676..581838 (+) 2163 WP_000875023.1 YccS family putative transporter -
  G6O62_RS03170 (G6O62_03180) sxy/tfoX 581801..582430 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G6O62_RS03175 (G6O62_03185) sulA 582649..583158 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G6O62_RS03180 (G6O62_03190) ompA 583513..584553 (+) 1041 WP_000750416.1 porin OmpA -
  G6O62_RS03185 (G6O62_03195) matP 584629..585081 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  G6O62_RS03190 (G6O62_03200) - 585267..587027 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=425180 G6O62_RS03170 WP_000839153.1 581801..582430(-) (sxy/tfoX) [Shigella sonnei strain 7111.69]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=425180 G6O62_RS03170 WP_000839153.1 581801..582430(-) (sxy/tfoX) [Shigella sonnei strain 7111.69]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1